barSeed - Barley Seed Development Database

Probe CUST_8719_PI390587928

Source Contig U35_14308

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8719_PI390587928	Hv_44K_v2	TGATGGCAGCAAGAATACTTATGTTAACAAGTCTTCACCCTTTGTGCATTTAATAGTTTC	877	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.206	1.003	1.137	0.992	0.393	0.292
Raw	38.512	52.215	48.858	71.224	9.111	7.592

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_14308	1269	3e-25	878 - 937	100	60 / 60	plus

Contig Sequence (1269 bp)

>U35_14308 1269 Hv_44K_v2
TTCGACAGATATTGTCCTAACTGACCACCAGTAATTTCTCTAATGTATCAGCATGGAATG
TCTCCTCCTGTTTTTCATGTTTACTATCCTTGTTAGTTTAGTACCATTTTCAAGATGGTA
AGTATATATTGAAAAACCGTTTAAAATTTCTGAAATAGTTGCTCTGCATGTTATGGAGAT
GATCTGCATATCATTTTGAAACTTATTATGTAATATATTTTCTAATTCTGCACTTACTTA
GTACAGTACTACCAAACATTTGGAAGCAGAGCTAAACATTGAAATATATGCTGTGCTAGT
TACTTGGAGCCACACAAAGATATAAAATCTCGGTTAACAAATGCTATCTGAAATTTAAGA
AACTGGAAGTAAATGGATGCTGTAGAAAAGTGAAATGCCCTCCATGTGTTTGTATTGTCC
CTTTGACCATGTATTCAGTAGTAATCATCTCCTTGTTGACATCAATGTGAATATCCCATG
CAAGTTGCGACTGTACCGTTTGCCCCACATGACAAGATATGAGCCTGACCCATAGTAATC
TTTTTCTTCTTCTTCAGAAACTAGTACAGTTATCTTGCAGAATAGGAATGGAGATGTGTA
TCGGTCCTAGTTTATTTCTCTCCTCTGTTGACTGCATGAATAACATTATGTGATTATTCT
GCAGACCACATTTTTACCTCATGTGTGTTTTTATTCGAATAACATGATGATGGTTGTAAC
CTGTAGTTAATTCCTTGGACAAAGACCAAATGTGTTAACAGACTACCTTGTATAATTTGT
CACACATATTAATTACAGTACTTATTTTATTTTATGGGTACATGAGGCCACGATTAATGT
TGGGTACTAGTTTACTAGTGGCGTAATTCTTATGTAGTGATGGCAGCAAGAATACTTATG
TTAACAAGTCTTCACCCTTTGTGCATTTAATAGTTTCCTTGTTCTGAAAGCCTTACCATC
ATTTTCTTCTTGAAGGTGGCAATGGCAAGAGCATATTGTGCAGAGGAAGAGGATGAGAAG
AAACTTGTGGTTCTCATCCAATCTTTGTGGAACTCTCTTTATGTGCGATTGTGCATTTGT
TGGGTCCTTTTTCTGTGCACTTGCACTTGCAGAAGTATCCTGTTGTGTACATGTAAAATT
ATTTTGATGTGCCCTTGTTAGGCGTTGAACCTTAATGCGTGGAGTCGGTGGATGATGTAT
TGTATTTGATGTGATATGCTACTAAAATGAAATATACAATTTATTTGCAATCAAAAAAAA
AAAAAAAAA

Homology of Contig U35_14308 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None