barSeed - Barley Seed Development Database

Probe CUST_8702_PI390587928

Source Contig U35_14327

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8702_PI390587928	Hv_44K_v2	GAGTGGATGATTCAAATTTTGCCGAACAATGGATTGCATCCATCCATATATAAATGTTGT	226	GeneList: sienna3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	14.904	8.976	1.685	0.345	0.088	0.083
Raw	1322.770	1264.676	199.024	65.915	4.386	5.314

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365354	2120	2e-24	1881 - 1940	100	60 / 60	plus	ABC18853
MLOC	MLOC_56385.5	754	2e-24	500 - 559	100	60 / 60	plus	ABC18853
MLOC	MLOC_56385.2	2360	2e-24	2184 - 2243	100	60 / 60	plus	ABC18853
JLOC1	JLOC1_36460.1	2309	8e-25	2110 - 2169	100	60 / 60	plus
Harvest21	ABC18853	497	6e-22	337 - 396	97	58 / 60	plus	ABC18853
Harvest35	U35_14328	714	3e-25	561 - 620	100	60 / 60	plus
Harvest35	U35_14327	470	3e-25	227 - 286	100	60 / 60	plus

Contig Sequence (470 bp)

>U35_14327 470 Hv_44K_v2
CCACGCGTCCGGCTGACCACTCCCAGCTTTGGAGATTTGAACCATTTGATCTCTGCCACC
ATGAGTGGGTGACCTGCGCCTGCGTGGGGACATACTCATCACTCTCTGGGATTGTCCAGA
ACTACTCCACCTGACTGCGAAGTACTTCGTTCCCTACATACATAGCAGAGAAGATTGCTC
GATAGACCGGATTATTATACATATAATTAAGCATATGTATGGGCGAGAGTGGATGATTCA
AATTTTGCCGAACAATGGATTGCATCCATCCATATATAAATGTTGTATTATTAGATTTGT
ATTGGTCTTAAATTTGTGGCAACTCCATATATGCATGCATGATAAATTTGTATTATTATT
GTTAAATTTCTGTGTTGATGGATCTTTGTCAGTTTTGCTAGCTAATTACGATTTACGAAT
ACTTTAAACTTTCATAAAATAAAAAAAAAAAAATAAAAAAAAAAAAAAAA

Homology of Contig U35_14327 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None