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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_8701_PI390587928Hv_44K_v2TTTCTGGCCATCCTTAAGGCAAAAGCGACTTGGTATCAGACTGCAACATGCTCATTCATC330GeneList: mediumpurple3
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 12.2427.3791.6310.4200.2450.202
Raw 383.455370.46367.37928.7754.4033.687



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK36535421202e-241651 - 171010060 / 60plus ABC18853
MLOCMLOC_56385.412612e-241010 - 106910060 / 60plus ABC18853
MLOCMLOC_56385.124052e-242152 - 221110060 / 60plus ABC18853
JLOC1JLOC1_36460.123098e-251880 - 193910060 / 60plus
Harvest21ABC188534973e-25107 - 16610060 / 60plusABC18853
Harvest35U35_143287143e-25331 - 39010060 / 60plus



Contig Sequence (714 bp)

>U35_14328 714 Hv_44K_v2
CCACGCGTCCGCAAAATGTTTGGTGAATCCACTGAGTCTCAGTTCACGCTCAACTTACCG
GAGAATCTGGTGGTTTCCAAGATTGCCGTCTGGGCTACGGTGGCAAATCCAATAACCAAA
TATGCATTGACAATAACCCCACTGGCCATGAGTCTGGAAGAGTTGCTGCCGCGAAGTCAG
CAGAAGTACTCCAACATGATCATTCTTAGATCAGCCCTGGTGGTGTCAACGCTCATCATT
GCTCTGTCAGTTCCCTTCTTTGCACTTGTGATGGCTCTGATTGGTTCTCTATTCGCGATG
CTTGTGACCTACATTCTACCTTGTGCCTGCTTTCTGGCCATCCTTAAGGCAAAAGCGACT
TGGTATCAGACTGCAACATGCTCATTCATCATCGCCGTAGGGGTGACCTGCGCCTGCGTG
GGGACATACTCATCACTCTCTGGGATTGTCCAGAACTACTCCACCTGACTGCGAAGTACT
TCGTTCCCTACATACATAGCAGAGAAGATTGCTCGATAGACCGGATTATTATACATATAA
TTAAGCATATGTATGGGCGAGAGTGGATGATTCAAATTTTGCCGAACAATGGATTGCATC
CATCCATATATAAATGTTGTATTATTAGATTTGTATTGGTCTTAAATTTGTGGCAACTCC
ATATATGCATGCATGATAAATTTGTATTATTATTGTTAAAAAAAAAAAAAAAAA



Homology of Contig U35_14328 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os02g01100.25721e-78protein|transmembrane amino acid transporter protein, putative, expressed
Brachypodium v1_2Bradi3g00280.15662e-85
Arabidopsis v10None