barSeed - Barley Seed Development Database

Probe CUST_8693_PI390587928

Source Contig U35_26308

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8693_PI390587928	Hv_44K_v2	TGCACATTGATATCTACTCGAGCTGGATCTTTGGGTATCAACCTTCATGCAGCAAACCGA	476	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.228	1.100	1.201	0.997	0.482	0.457
Raw	75.451	99.506	99.386	126.842	22.461	23.033

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10587.1	1231	2e-24	1087 - 1146	100	60 / 60	minus	None
MLOC	MLOC_10587.2	1133	2e-24	843 - 902	100	60 / 60	minus	None
JLOC1	JLOC1_6934.1	1258	8e-25	174 - 233	100	60 / 60	plus
Harvest21	ABC21427	573	3e-25	477 - 536	100	60 / 60	plus
Harvest35	U35_26308	573	3e-25	477 - 536	100	60 / 60	plus

Contig Sequence (573 bp)

>U35_26308 573 Hv_44K_v2
GAGAACAAAGAGGAAGTCTGCGGCGAGAAGATGCTGTTGAGAACTTCCTGACGGACGAGA
GTTCTAGTGATGATAATCATAATATTGAAAATCAATTCCCAGTCGGAGGGAAACAGAAGA
GTAGAACTGATCCGCAGTCCAAGAAAGTTGACTTTATGAACGAGGAAAGTAACTGGTGGG
AGAACCTTCTGGATGATAATACTTTTAAGGAAGCAGATTACAGTGGCAAAATGGTCTTGC
TCCTTGATATACTGGCGACTTGTTATGAATTGGGTGACAAGGCACTAGTGTTCAGCCAGA
ACTTGACCACTCTGGGTTTGGTGGAGTTTTATCTATCTAAGATGCAAATCAAAGGAAAAC
AAGGCAAATACTGGAAGCAGGGCAAGGATTGGTACAGGCTTGATGGGAGCACCCCACCTT
CCGAGCGGCAGAACCTTGTGGAAAGATTTAATGACCCTGCAAACACAAGAGTAAAATGCA
CATTGATATCTACTCGAGCTGGATCTTTGGGTATCAACCTTCATGCAGCAAACCGAGTGG
TCCTTCTGGACGGTTCATGGAATCCAACACATG

Homology of Contig U35_26308 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g31970.1	1477	1e-82	protein\|SNF2 family N-terminal domain containing protein, expressed
Brachypodium v1_2	Bradi3g27970.1	1503	8e-98
Arabidopsis v10	AT1G08600.3	1479	4e-54	\| Symbols: ATRX \| P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr1:2724562-2733431 FORWARD LENGTH=1479