- Probe CUST_8684_PI390587928
- Source Contig U35_14337
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_8684_PI390587928 | Hv_44K_v2 | CTTCACCTACCGTATTCATGACAAAAGGAATTTGATTGGATAATAATATGCGATGTACGA | 297 | GeneList: darkslateblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.930 | 3.585 | 1.982 | 0.513 | 0.113 | 0.019 |
| Raw | 1559.725 | 4518.228 | 2096.640 | 860.360 | 67.475 | 12.367 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC01513 | 404 | 3e-25 | 298 - 357 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01501 | 489 | 1e-23 | 300 - 359 | 98 | 59 / 60 | plus | ABC01501 |
| Harvest35 | U35_14337 | 404 | 3e-25 | 298 - 357 | 100 | 60 / 60 | plus |
Contig Sequence (404 bp)
>U35_14337 404 Hv_44K_v2 AACAAGCGTCCCAATAGCGTCGTATTATCAAGATGGACAAGTACCCAACTCCCATCCGTG CAAGAGTCCTACTGCAAGCTCTACTTCTTCTTCTCATATGTCATGCTACTACTACACAAT GTCGAATCATCAATGGCATCGATAAGGATAAGATCAATTTACATGGGTTGTGTGTCATAG ACAAACCAGTCCTTGGTGACTACTGTTGCAAAGTTACGCATGACTGTTACATAGACCTTC CGACGTGCCTTCAGGAGTGCAACAAACCTGATGGCGTGGTAGCGAGGGCAACCAATCCTT CACCTACCGTATTCATGACAAAAGGAATTTGATTGGATAATAATATGCGATGTACGAAAA ATATTTGAAATAAAAAGAAGTATCTCTGTTTTAAAAAAAAAAAA
Homology of Contig U35_14337 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |