barSeed - Barley Seed Development Database

Probe CUST_8682_PI390587928

Source Contig U35_14338

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8682_PI390587928	Hv_44K_v2	ATGATGCCTGGCGCTCATCGATTCTGCCTGAGATTAAAATTTTCACTTGCTGAACTGAGC	1811	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.986	1.940	1.085	0.647	0.128	0.107
Raw	695.777	671.939	338.120	324.716	22.614	19.989

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_39813.1	2197	8e-25	1954 - 2013	100	60 / 60	plus
Harvest21	ABC01507	1898	3e-25	1820 - 1879	100	60 / 60	plus	ABC01507
Harvest35	U35_14338	1890	3e-25	1812 - 1871	100	60 / 60	plus

Contig Sequence (1890 bp)

>U35_14338 1890 Hv_44K_v2
CCGGCCACCACACCCCCTCCTACTCCCCCCGCTCTCCCTCTCGCCGCCGACTGTTCTCGT
TGCGCGAACCATCTCATACCTCGGCGAAGATGAGGGAGATCCTGCACATCCAGGGTGGGC
AATGTGGCAACCAGATCGGTGCCAAGTTCTGGGAGGTGGTGTGTGATGAGCATGGCATTG
ACCCAACTGGGCGCTACACCGGTACCTCTGACCTGCAGTTGGAGCGTGTCAATGTCTACT
ACAATGAGGCCTCCTGTGGTCGCTTTGTGCCCCGTGCAGTTCTTATGGACCTTGAGCCGG
GTACCATGGACAGTGTCCGCACTGGGCCTTATGGGCAGATCTTCCGCCCTGACAACTTTG
TCTTTGGGCAATCTGGTGCTGGTAACAACTGGGCCAAGGGCCACTACACCGAGGGTGCTG
AGCTTATCGATTCTGTTTTGGATGTTGTGAGGAAGGAGGCTGAGAACTGTGACTGTCTGC
AAGGATTCCAAGTATGCCACTCCCTTGGTGGTGGTACTGGATCTGGCATGGGTACCCTGT
TGATATCTAAAATCAGGGAGGAGTACCCTGACCGCATGATGCTGACGTTCTCAGTGTTCC
CCTCACCAAAAGTATCTGACACTGTGGTTGAGCCATACAATGCAACTCTCTCAGTCCATC
AGTTGGTTGAGAATGCTGATGAGTGCATGGTTCTTGACAACGAGGCTCTCTATGACATCT
GTTTCAGGACTCTTAAGCTGACCACACCTAGCTTTGGGGACTTGAACCATCTAATCTCTG
CTACCATGAGTGGAGTCACATGCTGCCTGAGGTTCCCTGGTCAGCTGAATTCCGACCTCC
GGAAGCTGGCAGTGAACCTTATCCCCTTCCCTCGCCTCCACTTCTTCATGGTGGGCTTTG
CTCCATTGACATCCCGTGGGTCTCAGCAGTACCGTGCCCTCACGGTCCCAGAACTCACCC
AGCAAATGTGGGATGCCAAGAACATGATGTGCGCCGCCGATCCTCGCCATGGCCGTTACC
TCACCGCCTCTGCCATGTTCCGTGGTAAGATGAGCACAAAGGAGGTTGATGAGCAGATGA
TCAACGTCCAGAACAAGAACTCGTCCTACTTCGTGGAGTGGATCCCCAACAACGTGAAGT
CCAGCGTCTGTGACATCCCGCCGACAGGGCTCTCGATGGCGTCCACCTTCGTCGGCAACT
CGACCTCCATCCAGGAGATGTTCCGGAGGGTGAGCGAGCAGTTCACTGCCATGTTCAGGA
GGAAGGCTTTCTTGCATTGGTACACTGGCGAAGGCATGGACGAGATGGAGTTCACCGAGG
CCGAGAGCAACATGAACGACCTCGTCTCAGAGTACCAGCAGTACCAGGATGCCACTGCCG
ACGAGGAGGGCGAGTACGAGGATGAGGATCAGGAGGCCGAGGACGACATGTAAGGAGGGG
GAGGTCTGTGTGGTGCTTTGCTGGGTGGGGGTTCTAGGGGCAGAGTTTGATCTGTTTGGT
GCTTTGTTATGAATCTGTTTATCATCGCAACTACCGCTTGTACGCCACCGCCATTCTTCC
TGCCTTTCCTAAGCTTTGTATTTTCCATGTTATGGCACCTTCTGGGTATTGTATCACTTG
ATGCCGTACGGTATGTTCTGTGTCGGACATTTCTGGACCTCTCTGGTGGTGAATTCAGGC
TTTCTGAGTTGGTATTTCTTTGCAAAAAAAAAAAAAAAAATGTTTGCAGGGTGTATCATG
GTTCCAACAGACTAGTATTGAATTTCTCGAGTGGCCTCAGCCTGTCAGACTACTGTGTTG
TACATTGCTGTATGATGCCTGGCGCTCATCGATTCTGCCTGAGATTAAAATTTTCACTTG
CTGAACTGAGCCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_14338 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g59150.2	448	protein\|tubulin/FtsZ domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g52790.1	448
Arabidopsis v10	AT5G12250.1	449	\| Symbols: TUB6 \| beta-6 tubulin \| chr5:3961317-3962971 REVERSE LENGTH=449