barSeed - Barley Seed Development Database

Probe CUST_8677_PI390587928

Source Contig U35_26311

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8677_PI390587928	Hv_44K_v2	TTGTGGCTGACCGCGGACTCGAGCTACTGTCGACGACCTTCATTTCAGTGTCATTGTCAC	410	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60643.4	1451	7e-23	982 - 1042	98	60 / 61	minus	ABC20128
MLOC	MLOC_60643.3	1442	7e-23	907 - 967	98	60 / 61	minus	ABC20128
MLOC	MLOC_60643.1	1757	7e-23	1244 - 1304	98	60 / 61	minus	ABC20128
MLOC	MLOC_60643.8	1333	3e-21	801 - 858	98	57 / 58	minus	None
MLOC	MLOC_60643.2	1750	3e-21	1256 - 1313	98	57 / 58	minus	ABC20128
MLOC	MLOC_60643.7	1777	3e-21	1239 - 1296	98	57 / 58	minus	ABC20128
MLOC	MLOC_60643.5	1624	3e-21	1164 - 1221	98	57 / 58	minus	ABC20128
JLOC1	JLOC1_39560.4	1589	4e-23	431 - 491	98	60 / 61	plus
JLOC1	JLOC1_39560.2	1689	4e-23	476 - 536	98	60 / 61	plus
JLOC1	JLOC1_39560.1	1478	4e-23	476 - 536	98	60 / 61	plus
Harvest35	U35_26311	478	3e-25	411 - 470	100	60 / 60	plus

Contig Sequence (478 bp)

>U35_26311 478 Hv_44K_v2
ACTGAGATCCACGTGCTTCCCCAATTTCCGCCTCGGTCTCGCCGCCGCAGCCTCTGCATC
CCGCCGTCCACCGTCGACCCCGCAACGCACCGGCCTCCTCCGGATCCGTCGCGCCGCAGC
TGGCTTCGGAGTGACTAGTTTGGGATCCCCTTTCGCCGCGGCGACGCGGATGATGGACGC
GGCCGACGTGCTCGCGGCGCTGGCGCCCTCCCGGAGCGCGGCGGTGGTGCTGGCCTCCTA
CCTCGCGTACCTCGCCGCCGCGGGCGCCGTCCTCCCCGGCAAGCTCGTCGCCGGCGCCGT
CCTCCCCGACTCCTCCCGCCTCCACTACCGCTGCAATGGTCTGCTCTCGCTCCTGCTGCT
CTTGGGGCTCTCCTCGCTCGGCGTCTACATGGATTGGATGACTCCCACGGTTGTGGCTGA
CCGCGGACTCGAGCTACTGTCGACGACCTTCATTTCAGTGTCATTGTCACNTCCTGCT

Homology of Contig U35_26311 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None