barSeed - Barley Seed Development Database

Probe CUST_8675_PI390587928

Source Contig U35_26312

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8675_PI390587928	Hv_44K_v2	GGACGACACGTCAAGGAATAAGGTTGTATAATTTTCACATTTCTAAGGTAAAGGTATTGT	1344	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.974	0.813	0.720	0.588	1.345	1.198
Raw	2.818	2.699	2.492	3.323	2.896	2.946

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15272.2	576	2e-24	137 - 196	100	60 / 60	minus	ABC22400
JLOC1	JLOC1_10468.1	565	8e-25	139 - 198	100	60 / 60	minus
Harvest21	ABC22400	1437	3e-25	1345 - 1404	100	60 / 60	plus	ABC22400
Harvest35	U35_26312	1437	3e-25	1345 - 1404	100	60 / 60	plus

Contig Sequence (1437 bp)

>U35_26312 1437 Hv_44K_v2
ACAGAGATCATGGGCGCCTTCCGACTCAGCACGGAGCCGCGCAGCGCCGCGGTTTACGTC
CAGGGCGCCCCCGCCGGCGTCGACGTCAAGGTCATGGATCTTCGTGTCTTCCACGCGGAC
CGCAAGGCGCGCTTCACGCAACTCAAGGACAAGACTGACAAGGCGCGCAAGAGGGACGTG
GTTCTCAAGCTGGGCGCGGCGACGGGAGCGGCGCGCGTGCGCGTCGTGCAGTTGGACAAC
AGTTTCCCTTTCGGGACATGCATCAACACGACGGTCATCCAGAACCCAGCCTTCGTCGAC
TTCTTCACCAACCACTTGGACTGGGCCGTCTTCGAGAACGAGCTCAAGTGGTACCACACG
GAGGCGCAGCAAGGGCAGCTCAACTACGCCGACGCCGACGCGCTCCTCGACTTCTGCGAC
CGCCTGGGCAAGCGCGCCCGCGGCCACTGCGTCTTCTGGTCCACGGACGGCGTTGTGCAG
CAGTGGGTCAAGAACCTCGACCGCGACCAGCTCAGGTCCGCCGTCCAAAGCCGCATCCAG
GGCCTGGTGTCCCGCTACGCCGGCAGATTCCCGCACTACGACGTCAACAACGAGATGCTG
CACGGCCGCTTCTTCCGGGACCGCCTCGGCGACGAGGACGTCCCGGCGTACATGTTCAAG
GAGGTGGCGCGGCTGGACCCGGAGGCCGCGCTCTTCGTCAACGACTACAACGTGGAGTGC
GGCAACGACCCCAACGCGACGCCGGAGAAGTACGCCGACCAGGTCGCATGGCTGCAGAGC
TGCGGCGCGGTGGTGCGCGGCATCGGGCTGCAGGGCCACATCAGCAACCCCGTCGGGGAG
GTCATCTGCGGCGCCCTAGACAGGCTCGCCGCCACGGGCGTGCCCGTCTGGTTCACCGAG
CTGGACGTGTGCGAGGCCGACGTTGGCCTCCGCGCCCAGGACCTGGAGGTGGTGCTCCGG
GAGGCGTACGCGCACCCGGCGGTGGAGGGCATCGTGTTCTGGGGCATCATGCAGGGCAAA
ATGTGGCGCAAGGACGCCTGGCTTGTCGACGCCGACGGCACCGTGAACGAGGCAGGCCAG
ATGCTCATGAATCTCCACAAGGAGTGGAAGACGGACGCGCGCGGGAACGTCGACAACGAT
GGGAACTTCAAGTTCAGGGGCTTCCATGGCAGATACGTCGTGGAGGTTACGACGACGGTG
ACGGGGAAGGAGATGCTCAAGACCTTCACCGTGGAGAAAGGGGATAACACTCCTCTCCTG
GTGGATTTGGCGGATGTCTGACGGTGAATCTATCTAAGGTAGGAGTACTTCTTACCAATC
TAATTACATCCATGGTGATTGAAGGGACGACACGTCAAGGAATAAGGTTGTATAATTTTC
ACATTTCTAAGGTAAAGGTATTGTATTTTGTGAGAGAAATTAAGGTGTTGTAATGCT

Homology of Contig U35_26312 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g04300.1	558	0.0	protein\|glycosyl hydrolase family 10 protein, putative, expressed
Brachypodium v1_2	Bradi1g27257.1	542	0.0
Arabidopsis v10	AT1G58370.1	917	3e-138	\| Symbols: RXF12, ATXYN1 \| glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein \| chr1:21684751-21688209 FORWARD LENGTH=917