barSeed - Barley Seed Development Database

Probe CUST_8672_PI390587928

Source Contig U35_26315

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8672_PI390587928	Hv_44K_v2	TTCTACAGGTGGAGAACATACAGAGCGTGTATGACTTTTGCCTTAATCACGTCTCATGCT	291	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_44404.6	1466	2e-24	1058 - 1117	100	60 / 60	plus	ABC24298
MLOC	MLOC_44404.3	1466	2e-24	1385 - 1444	100	60 / 60	plus	ABC24298
JLOC1	JLOC1_28782.2	2418	8e-25	806 - 865	100	60 / 60	plus
Harvest21	ABC24298	662	3e-25	292 - 351	100	60 / 60	plus	ABC24298
Harvest35	U35_26315	662	3e-25	292 - 351	100	60 / 60	plus

Contig Sequence (662 bp)

>U35_26315 662 Hv_44K_v2
GCACGAGGATTCGAGCAACGCTGATTTTGCTTTCTGTGGGAATGCTTTCCTTGAATCATG
CCAATCAATTGGTGATGCCTCGGGTGGTTCCTTTAGCAGCTCAGAGTTGAACGGACAACC
ACTGAATGATGCACTTTTGGATATGGAGTCATCGTCATTTGGCTTCTTGAGCCAGATTCC
CCGGAATTTCAGTTTTTCAGACTTAACAGAGGGGTTCAACCAAAATACAGAAGTATTGGA
CAATTATAGCAGGTCACCATTTCTCTCATCTGAGCCAAATAACTTCTCAGATTCTACAGG
TGGAGAACATACAGAGCGTGTATGACTTTTGCCTTAATCACGTCTCATGCTGTGCCTGCA
GGCTGAGCAGCTACCCACCGTTTTGTACATATTCATGGAGAACTTGAGCAACTTTCATGT
TAGCATTTTCCCTTGTTAGTTCCAATGTCTTGTAATGTAACAGTATGGGATGAGTTGTAA
CTTGATGGGAACATGCAGTAGTTCTGCCCCCCGGTTGCTTGCCGAAGGTATTGTAGTTGT
GCCTGCCTTGTACATTGATGTTGTGGCTGTAAGATCCGCCATTAGTCGCTGTGATGTTTA
ATTTGCCGAAGGTATTGTAGTTGTGCCTGCCTTGTACATTGATGTTGGGCTGGTAAGATC
CG

Homology of Contig U35_26315 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g49180.1	290	2e-51	protein\|plant-specific domain TIGR01589 family protein, putative, expressed
Brachypodium v1_2	Bradi1g34566.1	293	6e-58
Arabidopsis v10	None