barSeed - Barley Seed Development Database

Probe CUST_8671_PI390587928

Source Contig U35_26316

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8671_PI390587928	Hv_44K_v2	CAAGAAAGACTACAGCTACGACGTGCAGAACGAGGACGAGGAGGTCACCCTGGTGACCAA	923	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.016	0.950	0.720	0.588	1.345	1.198
Raw	3.758	4.333	2.458	3.928	2.853	2.889

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54991.2	1566	2e-24	942 - 1001	100	60 / 60	plus	ABC06939
MLOC	MLOC_54991.1	1291	2e-24	730 - 789	100	60 / 60	minus	ABC06939
JLOC1	JLOC1_35442.1	1822	8e-25	996 - 1055	100	60 / 60	plus
Harvest21	ABC25084	1040	3e-25	924 - 983	100	60 / 60	plus
Harvest35	U35_26316	1040	3e-25	924 - 983	100	60 / 60	plus

Contig Sequence (1040 bp)

>U35_26316 1040 Hv_44K_v2
CTCCTCTTCTCTCTCCCCGACCTCTCGCTCTCTCTCTCTGTGGATACTGTTGTGTCCTCG
GCAATGGCGGGAAGCCGGCAGTCCATCCTCCTGGCCTTCGCCATCGGGGCAATGGTGGCG
GCGCTGCTGGCTTCCCCGGTGGCCGCCAAGAGCTACAACATCACCAAGATCCTGGCGGCG
CACCCGGAGTTTTCCAAGTTCAACGCGATGCTGAGCAAGACACGGCTCGCGTACGACATC
AACCGGCGCCAGACCATCACCGTGCTGGCCTTGGACAACTCGGCCATGGCGGCGTTGGAC
CACTACACGCTGCCAACCGTCCGCCACATCCTCTCCCTGCACGTCCTCGTTGACTACTAC
GGCAACAAGAAGCTCAAAACGCTCTCGCGCGGCGCCACCGCCTCCGCATCCATGTTCCAG
TCCACCGGGACGGCGTCGGGCATGTCGGGCTACGTGAACATCACGTCCCACAAGGGCGGC
AAGGTGGAGTTCGTCAGCGTGGACGCCGACGACACCGTCAAGCCTTCCCGGTACGTCAAG
TCCATCAAGGAGATCCCCTACGACATCTCGGTGCTCCAGATCGGCTCTGTCCTCTCCTCC
TCCGAGGCCGAGGCGCCTGTCCCGCCGCCGGCCCCCGTCGACCTCGTCGAGCTCCTCTCC
AAGAAGCACTGCAAGTCGTTCGCCGGGCTCATCTCCGGCAACGCCGACGTGTTCCGCACG
TACAACGAGACCAAGGACAACGGCCTCACTATCTTCTGCCCCGTCGACGCCGCCGTGGCC
GCCTTCATGCCCAAGTACAAGAACCTGACGGCCAAGGCCAAAACGGCCATCCTGCTCTAC
CACGGTGTGTCGGACTACTTCTCGCTGCAGCTGCTCAAGTCCAACAACGGCATGGTCTCC
ACCCTCGCCACCACCAGTGAGATCAAGAAAGACTACAGCTACGACGTGCAGAACGAGGAC
GAGGAGGTCACCCTGGTGACCAAGGTCGTTACCTTCACCATCACCGCCACCGTCGGCGAC
AGCGAGCCGCTCGCCGTCTA

Homology of Contig U35_26316 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g07350.1	402	3e-160	protein\|fasciclin-like arabinogalactan protein 8 precursor, putative, expressed
Brachypodium v1_2	Bradi4g34420.1	414	6e-125
Arabidopsis v10	AT4G12730.1	403	4e-88	\| Symbols: FLA2 \| FASCICLIN-like arabinogalactan 2 \| chr4:7491598-7492809 REVERSE LENGTH=403