barSeed - Barley Seed Development Database

Probe CUST_8654_PI390587928

Source Contig U35_12496

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8654_PI390587928	Hv_44K_v2	CTTGAAGTACTGATGATATCAGCTTCTCTCTTGATATCTAAAATTGTGGAGACTGTTTTG	774	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.148	0.486	1.063	2.267	1.478	1.566
Raw	3.965	28.253	53.801	179.083	42.013	47.989

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC24971	883	3e-25	50 - 109	100	60 / 60	minus	ABC24971
Harvest35	U35_12496	883	3e-25	775 - 834	100	60 / 60	plus

Contig Sequence (883 bp)

>U35_12496 883 Hv_44K_v2
CCGGTGCCGCGTGCGCCTGGGGGCCGATGCTTGCGTCATGAAACTAGCTGGCATGGTTTC
GGTTTTTTGATCCGCTTGCCGCTGGCTTGGTTCCTCCTGGTTCACCAACGGCAGTTGCGG
CTACTGCGGCTATGCGCTGAACCTGAGCTTGGCGGCGCGGAACACGGCGGGCATGGGGGG
GGAGTACTGCAAGCAGATCAGGAAGAAGGGCGTCGTCGCCTTCATCACCGTCGACGAGAC
CCGCTTCACGCAGGCCGACGAGGTCACCTGCGCGCCCCGCCTGCGCCTCTTCCGGCGGAG
GTCGCGCCAATTCTGCGGCAAGTGCGGCGGCCGCATTGGCTCCGCCAACGAGGTCGACGA
GGATGACGAGGACCCCGCCGGCCTGTCCGCGTGCACCGGTTCGGACGACGAGGACCCCGC
CGGCCTGTCCGCGTGCACCGGTTCGGACGACGACGACCCGCGGACGAGCCCGGGCGACGG
CGGCGGCGCCACCAGAAGGAGGAGCTACCTCATCAGGTTCGGCGCGCTGCAGCCCTGCAC
GGATGACTCTCCTGCTGCTGACGACCCCTTCTCTCTATGACAGGCTGCGACCCTCTATTT
TACGACACGGTTTGCTGAATTTTGTTTCTTGTTCATAGTAAGTACTACAGGGTAGACAGA
GTTCGATGTGTGTAAGTTGATCCGATAGTTTTTGTGTCCTGGTAATGAAGTGAGCCATGG
TTGCAGTTTTAGGTCACCTTGTGTCTGTCAATGGCTTAATTATAGCACCACCTACTTGAA
GTACTGATGATATCAGCTTCTCTCTTGATATCTAAAATTGTGGAGACTGTTTTGAATATC
CACAGATCAATATATTTCAGTTCGTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_12496 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None