barSeed - Barley Seed Development Database

Probe CUST_8653_PI390587928

Source Contig U35_48425

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8653_PI390587928	Hv_44K_v2	TGTGCGTGTTGTATTTTGTTGTTGAATTTTGCTGTCACATGACACCTCTTCCAATTCGGA	0	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15564.1	1020	9e-22	607 - 668	97	60 / 62	minus	ABC01151 ABC01184
JLOC1	JLOC1_10687.1	587	5e-22	174 - 235	97	60 / 62	minus
Harvest21	ABC50184	668	3e-25	1 - 60	100	60 / 60	minus
Harvest35	U35_48425	668	3e-25	1 - 60	100	60 / 60	minus

Contig Sequence (668 bp)

>U35_48425 668 Hv_44K_v2
TCCGAATTGGAAGAGGTGTCATGTGACAGCAAAATTCAACAACAAAATACAACACGCACA
AAAGAAAATGGAAAAGCAGAGACTCTGACCGCTCATAAGAGCACATGATGCTCAGGGGGA
AATGAAGAGAATTAGCACTTTGATTCAAAGTCCAGAATTCAAGACCAGAACAAAGCAACA
GGATCCATGAACTGAACATGAGTCAAGCACCGTTACTATTTCTCGAGATCCAGAAACATG
GCGATGCGATTCTTGCACGATAGCACGGCCACAAACACACACAGACGGGGCACCTAAGAC
TACGGAACACAGGAGCAGGAACAGCCTAGGAAGAGGTGAACTTGGTGACGGCCTTGGTGC
CCTCGGAGACGGCGTGCTTGGCGAGCTCGCCGGGGAGGACGAGGCGGACGGAGGTCTGGA
TCTCCCGGGACGTGATGGTGGGCTTCTTGTTGTAGCGGGCGAGCTTGGCGGCCTCGCCGG
CGAGCTTCTCGAAGATGTCGTTGATGAAGGAGTTCATGATGGACATGGCCTTGGAGGAGA
TGCCGATGTCGGGGTGCACCTGCTTCAGCACCTTGAAGATGTAGATCTTGTACGTCTCCA
CGCTCTTCTTGGCCTTCTTCTTGGCCTTGCCGCCCTCCTTGGCCGNCGACTTGCCCGCCG
GCAGCCGC

Homology of Contig U35_48425 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g38300.1	151	5e-55	protein\|Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g27760.1	154	3e-55
Arabidopsis v10	AT5G22880.1	145	2e-53	\| Symbols: H2B, HTB2 \| histone B2 \| chr5:7652130-7652567 REVERSE LENGTH=145