barSeed - Barley Seed Development Database

Probe CUST_8652_PI390587928

Source Contig U35_12497

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8652_PI390587928	Hv_44K_v2	TCTACCGCCTCGTCAACTCCATCTACGTGCTCGGCGTCACCACCGCCTCCGACCACGCCT	384	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356172	2146	2e-24	386 - 445	100	60 / 60	plus	ABC09079
MLOC	MLOC_2858.1	277	2e-24	93 - 152	100	60 / 60	minus	None
JLOC1	JLOC1_1708.1	264	8e-25	93 - 152	100	60 / 60	minus
Harvest35	U35_12497	484	3e-25	385 - 444	100	60 / 60	plus

Contig Sequence (484 bp)

>U35_12497 484 Hv_44K_v2
GTGCACCCGTCTCCTTGCTTGATTGCTTTACTCCCCGCGCCGCACCTACTCCCGGATCTC
ATCTCACATCCCAGATCCGAACCCTAACCAACTCTCGCCCCAGATCCGGCCGGCCGCCGG
CGATGGCGTGCCTCGCGATCTCCCTGCAGCCGGTGAACGGCCCGGACATCCTCCTGCAGA
CGCGCTCCTGGTTCCCCGTCTCGCGCGCCCTCGCCGCCGTCTCCGCCTTCCGCCTCGCGC
GCCTCCACCTCGCCCGCGGCAAGCAGCAGCATCCCTCCCCCTCCTCCGCCTCCGCCTCCG
CCGCGCTCGACGCCATCGGCGACGACCCGCTGGCCACCGGGTCGGGGCAGCTGGTGGTGG
GCGTCGAGTCGCAGTACCGCGTCGTCTACCGCCTCGTCAACTCCATCTACGTGCTCGGCG
TCACCACCGCCTCCGACCACGCCTCCCCCGCCGTCCACGCCTTCGCCGTCGCCGACGCCG
TCAA

Homology of Contig U35_12497 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g14620.1	642	2e-58	protein\|expressed protein
Brachypodium v1_2	Bradi3g18920.1	634	2e-60
Arabidopsis v10	None