barSeed - Barley Seed Development Database

Probe CUST_8651_PI390587928

Source Contig U35_48426

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8651_PI390587928	Hv_44K_v2	GACCTTGTTATTACGCTGAAAATGGCCTGTTTTAAGATGGAGCACTGAAAACCTGAAAAG	3	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.138	2.815	1.388	0.721	0.572	0.504
Raw	30.386	62.157	27.870	21.822	5.309	4.929

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16447.1	2478	7e-23	513 - 573	98	60 / 61	minus	None
Harvest21	ABC50186	658	3e-25	4 - 63	100	60 / 60	minus
Harvest35	U35_48426	658	3e-25	4 - 63	100	60 / 60	minus

Contig Sequence (658 bp)

>U35_48426 658 Hv_44K_v2
AAGCTTTTCAGGTTTTCAGTGCTCCATCTTAAAACAGGCCATTTTCAGCGTAATAACAAG
GTCCTCTCATATCTGCTGTGTCAACAGATTGACCAATTCAGCACTAACCTGACAGTTCAC
TTCAGTCTTCACTTGGAAGATTAGAAGCAACAACACACAGCCTACAAAATCACATCAAGC
TGCAATAGAAGATATGCACATGATCAAAATATTCAGATATATTATGTAACAAATGAGAAA
TGGTTAGCTACCGACTGAAGCTGTGGCCTGGCCGTACTCGGATTGACAAAACGGACTCCT
GGAACTGGAGTCGTCATTGTTCGCTCTAGTTTGTGGAAGAAAGAATTAGCTATGTAACAT
CAACTTGACTGTGTGCGGCATGCTTCCAAACACCGTGCTTGATTATCCTCGTTCTCAGAT
GCTCAACGTCATCCCATCTCTTTGCTTCTGCATAAACATTTGATACCGTGATGACATCCC
CATCATCGGCGGGCATCAGCTCTTGCAATTTCTGGAAAGCCTTGTTAGCAAGGTCCATGA
GCCCGTGCACTCGGCATGCAGCCAACACCATCTTCCAGAGCACAGAGTTTGCCTTGACAG
GCATATTATTGATCATTTGATACGCTTCTGCAACTTTACCGTAGCGGCAGAGCATGTC

Homology of Contig U35_48426 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g25860.1	532	5e-53
Arabidopsis v10	None