barSeed - Barley Seed Development Database

Probe CUST_8646_PI390587928

Source Contig U35_24472

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8646_PI390587928	Hv_44K_v2	TTTAAGAACGCTTCGATCATTTGCCCTGAGAGTGACATGGAAGCTCTGAGTCATGTTGCT	1036	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355795	2676	3e-21	1733 - 1792	97	58 / 60	plus	ABC25937
MLOC	MLOC_11648.1	1321	3e-21	961 - 1020	97	58 / 60	minus	ABC25937
JLOC1	JLOC1_7740.1	1448	2e-21	299 - 358	97	58 / 60	plus
Harvest35	U35_24472	1099	3e-25	1037 - 1096	100	60 / 60	plus

Contig Sequence (1099 bp)

>U35_24472 1099 Hv_44K_v2
ACGTGGGGCTCATCTGCAACTTGCTAGCGAGTCCTGGTCTGTCGCAGTTGATTGTGCATG
TGGAGGGCTTCTGGATGCATTTATTGTCTCGTGTCATCAGGATTTACAAGTTTTGCGAGA
ATGCGCGAGTAGAGTGTATTACAATAACCTTCGAATTATTGTGTATGATTTCACTAGACA
GCGATTGATCATTCCAGATGGTTCACTTCCTACAACAGAGCACCCTACAGTACTATCAGT
TATTCAGTCAGAGAACCACACTGTGCTGAATGTATTGGTAGATCAGGGACATGCTGAAAG
GCAAGTCCTGGTTCGAGATTATGAAGATGGAAAATCTGTTGCATTTGATCACAGGATGCG
GAATATAAAGGAAGTGTATACCTCTGATGGGTTCAGAATGTTTTCTAGGGGTTCTGTTCA
GACTATTCTTCCTCCAAACAAAAGGCCAAGACCTGAGCGTTGGTGCAGTTCACCGGCAGA
AAAAATAGCTAAACTGAAGAATGAAGTTGACGGCATTCAAAGAATAATCTCAGAAAAGAA
CGCTCAGAAAAGGAAGTTAGTTAATGACCGATGTAACCTTGAACAGAAAATAGCAAATTT
GAAGAGAAAACGAGGACCTGAGGAGCAACGTTTAATGAATAAAAAAGTGCAACTTGATGA
TGCAAAGAGAGATACTGCTGATAATAATAGGCATGCTGCTGTGGATACCACTGAACTAGA
GGAGGACATAAAGGAAGAGAAGAATAACATTGAGCAGAAAGAACAATCACTGCAGAAGAT
TAATGTAAAGTTAACTGCAGCTTTACGAGAAGTGAATGATAGAAAAACGGCTTACAAGAC
CTTTATGGATTCTGTGAATGAGGAGAGGTTGCATTTTAGCAGCGCAAATGATGAAGTAGA
TCTTGTTAAGCGTAAAATAGATGCAGCTCAGCAGGAGAAGGTTCACTATGAAGGTGTCAT
GACAACTAAAGTTTTATCTGTTATTAAAACGGCTGAAGCAGAGTATGCAGATCTTCAGCA
GCGTCGGCAGGAGTACTTTAAGAACGCTTCGATCATTTGCCCTGAGAGTGACATGGAAGC
TCTGAGTCATGTTGCTGGA

Homology of Contig U35_24472 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	Bradi4g08527.1	1050	9e-171
Arabidopsis v10	AT5G07660.1	1058	5e-78	\| Symbols: SMC6A \| structural maintenance of chromosomes 6A \| chr5:2422839-2429912 FORWARD LENGTH=1058