barSeed - Barley Seed Development Database

Probe CUST_8643_PI390587928

Source Contig U35_24475

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8643_PI390587928	Hv_44K_v2	ATTGCCATTGCCATTGCCAAGGGGAGGCTCTCGCTCCGCCTTTGCCATCCTCTAGTCCCG	37	GeneList: lightgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.378	0.387	0.905	1.005	1.914	3.420
Raw	15.155	23.523	48.824	77.425	53.524	109.091

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354246	1660	2e-24	50 - 109	100	60 / 60	plus	None
MLOC	MLOC_57229.1	2111	2e-24	1829 - 1888	100	60 / 60	minus	None
JLOC1	JLOC1_37052.1	2117	8e-25	1785 - 1844	100	60 / 60	minus
Harvest21	ABC18965	547	3e-25	38 - 97	100	60 / 60	plus
Harvest21	ABC34857	504	5e-23	24 - 79	100	56 / 56	plus
Harvest35	U35_24475	547	3e-25	38 - 97	100	60 / 60	plus

Contig Sequence (547 bp)

>U35_24475 547 Hv_44K_v2
GTACAGAGCGCCGCTGTCGGTCGCCGCCGCGGTCTCCATTGCCATTGCCATTGCCAAGGG
GAGGCTCTCGCTCCGCCTTTGCCATCCTCTAGTCCCGCTCCCGCCCACCCCTCTGCGCCG
GCGTCCGGTCCTTGTCACCGCGCGCGCGTCGTGGTGGTGCCGAGCGCGATGGCGTCGTCG
TGGGCGCTTCTGGCCGCGGTGCTGCTGACGACCCACGCCGTGGCGGCGGTGTCTGGCACC
CGGGCAGCGGCGGATGCTACACGGCTGCCTTCGTCGGAGCCGGGGTTCAGGGAGGCGCCC
GCGTTCCGGAACGGCGACGGGTGCCCGCCGCGGGGCGCGGGGGAGCGCGTGCACATCGCC
ATGACGCTGGACGCCAACTACCTCCGGGGCACCGTCGCGGCGGTCTTCTCCATCCTGCAG
CACACGGCGTGCCCAGAGGACGTGTCGTTCCACTTCCTGGCGGCGCGGCGGCGGGACGCC
GACGCCGTGCGCGCCACCTTCCCGTACCTGGACCCCAGCGTGTACATCTTCGACCCCGCC
CGCGTCA

Homology of Contig U35_24475 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None