barSeed - Barley Seed Development Database

Probe CUST_8642_PI390587928

Source Contig U35_24476

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8642_PI390587928	Hv_44K_v2	TTCCGTTTTTGCTCCCAGTGATCGTGATGTCTGTATTCAGATTGGGCTACGTGAATCAGT	713	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63126.1	1868	2e-24	112 - 171	100	60 / 60	minus	ABC13982
MLOC	AK355653	1728	7e-23	1636 - 1695	98	59 / 60	plus	ABC13982
JLOC1	JLOC1_41339.1	1870	8e-25	1687 - 1746	100	60 / 60	plus
Harvest35	U35_24476	823	3e-25	714 - 773	100	60 / 60	plus

Contig Sequence (823 bp)

>U35_24476 823 Hv_44K_v2
CCGACGGCTCCGTCGTGTACGTGGCGTTCGGCACCTCCACCGTCTTCGAGCCCCGGCAGT
TCCGCGAGCTCGCCGAGGGGCTGGAGCTCACCGGCCGGCCCTTCCTGTGGGTGGTGCGTC
CGGACTTCACGTCCGGCGCCGGGATCGGCAAGGCGTGGTTCGACGAGTTCGAAGGCCGCG
TCGCCGGCAAGGGCATGGTCGTCAGCTGGTGCTCCCAGCAGCAGGTCCTGGCGCACCGCG
CCGTGGCGTGCTTCGTGTCCCACTGCGGATGGAACTCGACGATGGAAGGGGTGAGGAACG
GCGTGCCCTTCCTGTGCTGGTCCAGGCTGAAGGTCGACCAGTACACCAACCGGAGCTACA
TCTGCGACATCTGGATGACCGGCCTGGCCGTGTCGCCTGGGGATGACGGGGTGGTGACCA
GGGAGGAGGTGAACACCAAGCTGGGACAAGTCATGGGTGACCATGGGATTGCGGAGAGGG
CACGGGTGCTCAGGGACGCGGCTCGCAGGAGCCTCGGTGAGGGCGGCTCGTCCTATGAGA
ATTTCAAGAGATTCATCAACCTCCTAAAGGAGTGAGCTGTACGTGTTTTAAATTAGCTTT
GACGGTCAGGATTATCGCTCTCCCAGTGACCGTGATGTTCGTATTTCATTTTTGCTACTG
TTTCGAAGAGGAAGAAGCGATGCCGCGACTGTGTCTTGGCGGGAATGTTCGTATTCCGTT
TTTGCTCCCAGTGATCGTGATGTCTGTATTCAGATTGGGCTACGTGAATCAGTGGGACAG
GCTACATGGAACTTGGAAGTTGGGTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_24476 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g55030.2	441	4e-85	protein\|UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed
Brachypodium v1_2	Bradi1g08157.1	457	3e-106
Arabidopsis v10	None