barSeed - Barley Seed Development Database

Probe CUST_8639_PI390587928

Source Contig U35_50740

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8639_PI390587928	Hv_44K_v2	AATTATTGGGGTTTTTCTTCAGAACAACACACGGCTTGCTATCGTCAACAGAAATGGAAT	34	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.238	1.363	1.324	0.961	0.360	0.367
Raw	2070.280	3576.756	2969.683	3346.497	447.952	494.347

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_50740	350	3e-25	35 - 94	100	60 / 60	minus

Contig Sequence (350 bp)

>U35_50740 350 Hv_44K_v2
TTTTTTTTTTTTTTTTTCCCACAAAGAAATCGTAATTCCATTTCTGTTGACGATAGCAAG
CCGTGTGTTGTTCTGAAGAAAAACCCCAATAATTGACAGAAAATACCGACGAAGATCAAG
CAGATGTTCTAGAGACGAAGCAATATCTACATGGAGTCCATTACAGGTATTTGCAAGCTG
CTGCTTCATGGAATGAACCCTCTCTGTACCTTGTGATGCCCGAGCATTTTGGCACCTTGC
TCACAGCTTCTATGAAGTTCTCCACTGCAACTCGATCTGAATCTTGCCATGCAATATTCC
TTTCTTTCCAGCTTTGCTTAGGACTTCAACATGCAACTTATCATTTGTAG

Homology of Contig U35_50740 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None