barSeed - Barley Seed Development Database

Probe CUST_8633_PI390587928

Source Contig U35_50745

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8633_PI390587928	Hv_44K_v2	TGTATGTCATCAACGATGCAAAGTAATTCATCCGACCAAAGGGTTTGTTCGTAACGCTGT	0	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.629	4.865	1.323	0.664	0.232	0.419
Raw	717.377	1013.917	228.962	198.887	21.362	44.535

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_50745	536	3e-25	1 - 60	100	60 / 60	minus

Contig Sequence (536 bp)

>U35_50745 536 Hv_44K_v2
ACAGCGTTACGAACAAACCCTTTGGTCGGATGAATTACTTTGCATCGTTGATGACATACA
TGCACATTGGACCTACGTAAATTACAGAGTAAAAACTCGGCCCGGGTTACAGGGAGATGC
TTTCTTAGCCGGCAAGAACGCTGGGGTTGAAAACAAGGAGGGCCCCCCCCCCGAGGAGGC
CGGCGAGGGTGACGGCCCAAATAAGAAGCCCGGGCGTTCCACCGGCGTAGCGGTCACCAA
ATTCGGACCATTCCTCTGGGGGGGAAATTGGGCTGTAACCCTCAACATTGGCGCCCTACT
TGTCAACAAACTGGTAAACACCCTTCTTGCCGACCTTCCTGCCGGGGGCGTCAATGTCGA
CGGGCAAGCCGCCTCCGAGTCCGAGGGGCTTGTCAACCTTGATCTTCTTGCCACCGCTGC
AAACAACGGCAAAGGAGGAGCCCCGGCGGGAAAGGGACGGTAGGCTCCTCGGCGCCACAA
TCGGGGAGGGGATCATGGAGGGTGCCATTTCGCTCGCGCTCTCTCTCACCTGGGGC

Homology of Contig U35_50745 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None