barSeed - Barley Seed Development Database

Probe CUST_8630_PI390587928

Source Contig U35_36454

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8630_PI390587928	Hv_44K_v2	TTTCTCTGTTTGTGAATAATTTGACGGTATACCAGCATGTGTTTCCGACAGTACATGAAT	580	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.165	1.356	1.354	1.077	0.458	0.308
Raw	133.875	243.153	209.461	261.040	40.634	28.556

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14859.1	1671	2e-23	17 - 74	100	58 / 58	minus	None
JLOC1	JLOC1_10150.1	1637	2e-21	1584 - 1637	100	54 / 54	plus
Harvest35	U35_36454	640	3e-25	581 - 640	100	60 / 60	plus

Contig Sequence (640 bp)

>U35_36454 640 Hv_44K_v2
GGGGGGTACTTGAAGATTCTAGTAGTGAACAGTATTGGACCTTGAAGTACAATGTGAGCT
ACTTGCAACTGTTCGGTTCAAGCTCTAAGGAATATTACGGTGTTATCTCTGCCCACCCAG
AAGACGATGTGATATTCATAACGGTACAATCTACATTATCGGGGCACCGATTACAGATGA
AATTATTTTCATACAAAATTGATTCTAAGGAGCTGCGTTTCATATGTGATCTTGGATGGA
CTTCGAGGCGCCCTTATCTTCCATATGTTCCTTTGTTCTCAGAGTCATTGGCAGATGGGC
ACTAAATGTCTTGTGTAGCGGAGCCTCACAGTTGTCCGCCTTTCTGATGATGATTGTGGA
GTTTGATCTCGATTCTTGAATATGAGCAACAGTAATCTGGGTAAGTTCTGAGAAGCTGTT
GCTGCTTGAGTGAAGTCATGGACTGACTTTATGCTGCTAGCTCTTCAGTCAATTTAGTAC
TCTGCCTGTGTTTTTGTAGTTCTGTACTTAATCATGGATATGTGACCGTCTTGTTGAAAC
TAGTATGAATATTTTAAGATCTGGAGTCTGGTGTCTGTTATTTCTCTGTTTGTGAATAAT
TTGACGGTATACCAGCATGTGTTTCCGACAGTACATGAAT

Homology of Contig U35_36454 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None