barSeed - Barley Seed Development Database

Probe CUST_862_PI390587928

Source Contig U35_22863

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_862_PI390587928	Hv_44K_v2	ATGAACTTCATCATCAACAATTGTGGCGAGGTGTTCGAGGGGATTACCTCGATTGTTGAC	612	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54134.1	1411	2e-24	737 - 796	100	60 / 60	minus	ABC44582 ABC52653
MLOC	MLOC_54134.2	1307	2e-24	579 - 638	100	60 / 60	minus	ABC44582 ABC44863
JLOC1	JLOC1_34836.1	1475	8e-25	667 - 726	100	60 / 60	plus
Harvest21	ABC17630	685	3e-25	613 - 672	100	60 / 60	plus
Harvest35	U35_22863	686	3e-25	613 - 672	100	60 / 60	plus

Contig Sequence (686 bp)

>U35_22863 686 Hv_44K_v2
TAGCAAAACATTATGGCTGAAAACCACCAGGCTGTGAAAATGCCAACCTCTTCCAACAAG
GAACTTTTACAAGCGCACGCTGAGCTTTGGAATCTCACCTTTAGCTACCTCAAATCCATG
GCCCTAGAGTGTGCCATCAAGCTAGGGATTCCCACTGCCATCCACCGTTGTGGAGGCACC
GCCTCATTGACAGACCTACTCGCCGCCCTTTCTATACCTGAGAGCAAGAAGTCTTACCTG
CCTCGTCTCATGAGGTTTCTCGCCGCGTCAGGTATCTTTACTATTGATTTTCTGGCAACA
GGGGAGTGCGCTAACGCAGGCGCAACTGTTACCTACCGTCTCACACCGTTATCTCACCTC
CTCGTGGATGGAGATGACACCTATGCCCACCAGTGCACGAGCCTCTCTCCCTTCGTGCTT
GCGCAGACCAACAAGTACCATGTCACGGCGGCCATGCACTTCTCCGATTGGTTCACGAGC
GATGAAGGCTCAGCCTCGGCCGAGATGCCATACAAGATGGCACATGGCACAGACCATTGG
GAAATCATGGCCCGTGATCCAAAGCTAAATCAGGTCTTCAACGCCGGCATGGCGGCCGAT
ACCCAATTTGCGATGAACTTCATCATCAACAATTGTGGCGAGGTGTTCGAGGGGATTACC
TCGATTGTTGACGTCGCCGGTGGGAC

Homology of Contig U35_22863 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g19420.1	376	5e-82	protein\|O-methyltransferase, putative, expressed
Brachypodium v1_2	Bradi3g37551.1	355	4e-87
Arabidopsis v10	None