barSeed - Barley Seed Development Database

Probe CUST_8614_PI390587928

Source Contig U35_24484

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8614_PI390587928	Hv_44K_v2	TAGATGTTGATCGTCTCGGTGTTTCGTTCTTGATTCATGCAGGAACCTGCAGATGGAGTA	427	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75088.6	1553	2e-24	879 - 938	100	60 / 60	minus	ABC44963
Harvest21	ABC19474	593	3e-25	428 - 487	100	60 / 60	plus
Harvest35	U35_24484	593	3e-25	428 - 487	100	60 / 60	plus

Contig Sequence (593 bp)

>U35_24484 593 Hv_44K_v2
AGGCTCGACCACGCGTCAGTGCGAGTCGACGCAGCTGTTGTGCACTCCGCCGCAGAGAGA
CGACCCATGGCCTCGACAACGGCGGTGCCGGAGGTGGCGCTGCGGTCCGGCGACGCGAGG
CCCATGCCGGCGATCGGCATGGGCACCGCCAAGTTCCCGGTGGTGCCGGAGACGACCATG
AAGGCCATGCTGGAGGCCGTGGAGCTCGGCTACCGCCACTTCGACACGGCCTCCATGTAC
GCGACGGAGCGGCCCCTGGGCGAGGCCCTCGCGGAGGCGGTGCGCCGCGGGCTCCTGGCG
TCCAGGGAGGAGGTGTTCGTCACGTCCAAGCTCTGGTGCACGCAGTGCCACCCGCACCTC
GTGCTCCCGTCGCTCCGGGAGAGCCTCCGGTAAGCTCGGTCGATCTATACTTACTTTTGG
CCGTTGATAGATGTTGATCGTCTCGGTGTTTCGTTCTTGATTCATGCAGGAACCTGCAGA
TGGAGTACGTGGACCTGTACCTGATCCACTGGCCGATCAGCCTGAAGCCCGGGCCGGCGG
TGTTGCCGGTGAAGCGGGAGGAGGCCGTCCCGTTCGACTTCGAGGGCGTGTGG

Homology of Contig U35_24484 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g37480.1	324	8e-58	protein\|oxidoreductase, aldo/keto reductase family protein, putative, expressed
Brachypodium v1_2	Bradi5g11630.1	324	1e-57
Arabidopsis v10	None