barSeed
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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_860_PI390587928Hv_44K_v2CTCGAATTGAATTGAATCTAGAAAAGGCTCTGCACGACTGCACGTATTGTGTCTAAAAAA518GeneList: lightcyan1
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.0480.3410.9751.8021.3441.577
Raw 4.52969.275157.085404.235123.157156.707



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_65764.16289e-2252 - 10610055 / 55minus None
Harvest35U35_228655893e-25519 - 57810060 / 60plus



Contig Sequence (589 bp)

>U35_22865 589 Hv_44K_v2
GAGGGAGAAGAGAGGACCAGGGCAACCAGCGCCTCATCCGCTGTTCTCCTCGCCCCTACG
TCCGCATGCCAAGGCGCCGACGTGTGCAAGAACCACGAAAGATTCGAGTTAGATCGATGA
AGATGCACCAGGAAGCGGCGGAGGTCATGACGCCGGCGCCGATCAAGAAGGGGTGCGCTA
CGTTCTTGGTGGGCGGGGAGGTGGAGGATGGGGCGTCGAGAAGGTTCGCGGTGCCGGTGG
AGCTGCTCGTGCACCCACGGATCATGGAGCTGCTCGGGGAGGCGCAGGAGGAATACGCCT
ACGCTTACGAGGGCGCAATCGTCCTGCCCTGTGGCGTCGAGCGCTTCGAGAAGGCCGTCT
CCGCGGCGAGGGCCCAAGAACGGCACCGTCATCAGCAACACCACCATCATCACTTCAGCC
TTGCTCAGCTTGTCGGATGCTTTAGGCCGTCGCATGTTGTTGTTTAGGATCCACGTGCGC
GGCTAGGTTTAGTTCCCACGTGTTTCCTTGGTTTGTTGCTCGAATTGAATTGAATCTAGA
AAAGGCTCTGCACGACTGCACGTATTGTGTCTAAAAAAAAAAAAAAAAA



Homology of Contig U35_22865 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None