barSeed - Barley Seed Development Database

Probe CUST_85_PI415269222

Source Contig TA52111_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_85_PI415269222	Hv_44K_v2	TTAATATACTAGCAGAAATTTCACAATCGGGAAAACAATGGCAGCATGGTTCCGTATCGC	1096	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56326.5	2318	3e-22	1220 - 1278	98	59 / 60	plus	ABC16810
MLOC	MLOC_56326.1	9583	3e-22	8432 - 8490	98	59 / 60	minus	ABC04501 ABC08038 ABC16810 ABC34614
MLOC	MLOC_56326.2	2255	3e-22	1079 - 1137	98	59 / 60	minus	ABC16810 ABC34614
MLOC	MLOC_56326.4	2152	3e-22	1073 - 1131	98	59 / 60	minus	ABC16810 ABC34614
MLOC	MLOC_56326.3	1973	3e-22	1073 - 1131	98	59 / 60	minus	ABC16810 ABC34614
MLOC	MLOC_56325.2	6805	3e-22	5615 - 5673	98	59 / 60	minus	ABC04501 ABC08038 ABC16810 ABC34614
JLOC1	JLOC1_36418.6	2982	1e-22	1152 - 1210	98	59 / 60	plus
JLOC1	JLOC1_36418.5	2720	1e-22	981 - 1039	98	59 / 60	plus
JLOC1	JLOC1_36418.4	2849	1e-22	1019 - 1077	98	59 / 60	plus
JLOC1	JLOC1_36418.3	2799	1e-22	969 - 1027	98	59 / 60	plus
JLOC1	JLOC1_36418.2	2683	1e-22	853 - 911	98	59 / 60	plus
JLOC1	JLOC1_36418.1	2843	1e-22	1013 - 1071	98	59 / 60	plus
Harvest21	ABC17289	1417	5e-23	1088 - 1146	98	59 / 60	plus
Harvest35	U35_22776	1417	5e-23	1088 - 1146	98	59 / 60	plus

Contig Sequence (1159 bp)

>TA52111_4513 1159 Hv_44K_v2
CGGCACGAGGGGAGAACGTCTACGCGGGGGCTGCGCCGCCGTCCGAGGACCGCTACCGCT
CCCCTTCCTCCGCCGCCAAGCCGCTCGGAGACGTCACGCCCACGCTCAACCGTGTCCTCC
CGCCGCGGCCCCTCAAGCGGAAGCTCGACGTCTCCCCCGCCGTGGGCCCGCGGCCGCGGC
CGGAAGCGGACGCGTCCGACTCCGGGGTCCAGGTACCGCCTAGGGTTTCGTGCCGGGATC
TGCGTGTCTGCTGATTTGCTCTGGTTACATTGCATTGCATTACAGGTTGTGGTGAGGATA
CGGCCCCCGTGCTCGGTGGAGGGGGAGGAGGCTCCTGGCTCGTGCCTCTGCAAGACGTCC
ACCAACTCTGTCGCCATCCAGGGCCAGAGCTTCACCTTCGACGCCGTCGCCGACGCAGCC
TCTACGCAGGAAGATTTTTTCACGCTTGTTGGGCCACCGCTCGTTGAGAATTGCTTGTCG
GGGTTGAACAGCTCGATTTTTACCTATGGCCAGACTGGGAGTGGAAAGACATACACAATG
TGGGGCCCTCTCTCTGCAATTTCAGGAGACTCAATGGCCTGTGAGAGGGGACTGGCACCC
CGTGTTTTTGAGCACTTGTTCTCCCGGATTAAACAAGAACAGGGGAAGCACAAAGACAAG
GAGCTAATTTGCAGTTGTACCTGCTCTTTTCTCGAGATCTACAACGAACAGATAACTGAT
TTGCTAGACCCCATGCAAAAAAATCTCCAGATAAGAGAGGACGTTAAAACTGCTTGTGTT
TATGTTGAATCGTTGACAAAGGAGTCTGTTTTCACCATGAAGGATGTAAATCAGCTGTTG
GTGAAGGGGTTGGCAAACCGGAGAACAGGGTCAACAAGTGCCAATGCAGACAGTTCACGC
TCTCACTGTGTTTTTACATGTGTAGTCAAATCTGAATCAAAGAATCTTGGAGATGGCTCA
AACATCATTAGAATGAGCAGGATGAATTTAGTAGATCTTGCTGGATCTGAGAGGCAAAAG
CTAACCCATGCAGCTGGGAATCGCCTAAAAGAAGCAGGAAATATAAACCGGTCACTTTCA
GCACTTGGAAACTTGATTAATATACTAGCAGAAATTTCACAATCGGGAAAACAATGGCAG
CATGGTTCCGTATCGCAAT

Homology of Contig TA52111_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g28850.1	1065	1e-108	protein\|Kinesin motor domain domain containing protein, expressed
Brachypodium v1_2	Bradi5g06640.1	1077	2e-77
Arabidopsis v10	AT3G23670.1	1313	8e-113	\| Symbols: PAKRP1L, KINESIN-12B \| phragmoplast-associated kinesin-related protein, putative \| chr3:8519290-8525055 FORWARD LENGTH=1313