barSeed - Barley Seed Development Database

Probe CUST_8593_PI390587928

Source Contig U35_48440

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8593_PI390587928	Hv_44K_v2	CATGCAGATTATCCACCTTCAGATTATAGGTAGCAAGTATGATTGTACACAGTTTTCATC	20	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370755	2107	2e-24	2021 - 2080	100	60 / 60	plus	None
MLOC	MLOC_57884.1	1496	2e-24	1359 - 1418	100	60 / 60	plus	None
JLOC1	JLOC1_37590.1	1511	8e-25	1345 - 1404	100	60 / 60	plus
Harvest21	ABC50212	536	3e-25	21 - 80	100	60 / 60	minus
Harvest35	U35_48440	536	3e-25	21 - 80	100	60 / 60	minus

Contig Sequence (536 bp)

>U35_48440 536 Hv_44K_v2
ACATTACTTAAAGTGATATTGATGAAAACTGTGTACAATCATACTTGCTACCTATAATCT
GAAGGTGGATAATCTGCATGCTCTGTCTTCCCAAATGCTATACGTGACACATATAATTCC
ATTGGTAAGTAAATTAACCACATAATGACATTGGGCGCCAAAATAGTAGTTAAAAGACCT
GAGAGGGTCGCCGATGAAATCTTAGTTTACCACTGAGTCGTCTTCATCAAACAGATGCCA
GGAGAGGCATTATCGGTTTTCAGGAAGCACGGGCAATGTATTTGCAGGAAATACTGCAGA
ACGTGACCCTTCCGCCTTCTTCCTTATCTGCTCTAGAAGCCTATGAGCTTCTCGTATCTC
ATAGTTCGAACTATGGCCACAGCTTTCATAAGCATCTATAACTCGTTGTTGAAAATCCAT
GGCATTCTTGTAACTGCAATAAGAAGCAGTATCAAATGTAAAATAGCGACACGGGTATTC
ACGACATATATAAGAAGTGCTTTACTATAAATCGTTAGAACATGGTCGGAAAATTG

Homology of Contig U35_48440 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None