barSeed - Barley Seed Development Database

Probe CUST_8590_PI390587928

Source Contig U35_48443

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8590_PI390587928	Hv_44K_v2	ATCATTGCTACCATACCGTACCAATGTACTGATCTGAGATGCTGGGTGTCGATTGACTGT	385	GeneList: green MasterList: Pathogenesis_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.381	1.465	1.369	0.864	0.229	0.292
Raw	47.350	80.076	63.298	63.707	4.460	7.609

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC50219	650	3e-25	386 - 445	100	60 / 60	minus
Harvest35	U35_48443	650	3e-25	386 - 445	100	60 / 60	minus

Contig Sequence (650 bp)

>U35_48443 650 Hv_44K_v2
AAATTTTATTTCGTCCTCGCAGGGAAAAACAACCGGAAAGGAACTACATAACACTTAGCG
GTTCACACTACAAGCAGGTCCATCACAAGATACGAGGCGTCAAAAGCAAAACAATGCAAC
ACCCCATCGACCGACCGATCTAATCCAAATCCAGACAAACACATGACATGGCCACTGGGC
CGACGACAGATTCTTATTGCTCTTCTTCTTCATGATCTTCTTCTTCTTCATGACCTTCTT
CTTCATGATCTTCTTCTTCTTCATTACCGACCCTCAGGCGCCGATCTTGAATCAGCAGCA
GCCCTCAGACGCCTCGCCGAATCCAAGTTCAGAGAGCTTGAGGTGTGCCTCGGCGTAGTC
AGCAAAGAACGCATCCTCATCCTGCACAGTCAATCGACACCCAGCATCTCAGATCAGTAC
ATTGGTACGGTATGGTAGCAATGATGAACTCTGTAAGAAGCCAATAGGCTACAAAGGATC
AAGGGTGTACCGCAGCATATTTGTCCACAAGTGGGCGGAAGGCCGGGTCAGTCAGCAGGA
CCTTGTCGGTCGGCAACTGAAGAAGACCTTCCTTCTCCCCACTCAGGATCTCACTGTCAA
GAGAAGAAAATTNTGGTTCAAGGAAATAACAGCATTAGCAGGAAAATAAA

Homology of Contig U35_48443 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None