barSeed - Barley Seed Development Database

Probe CUST_8589_PI390587928

Source Contig U35_48446

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8589_PI390587928	Hv_44K_v2	CTCAACTGTACATATGAGAGCCACTTTACAGCTACAGATGCAAGTTCAAGTTGATGACAC	0	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.241	0.704	0.963	1.335	1.055	1.586
Raw	69.014	338.605	384.195	854.389	232.056	380.432

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC11867	725	4e-24	668 - 725	100	58 / 58	plus	ABC11867
Harvest35	U35_48446	600	3e-25	1 - 60	100	60 / 60	minus

Contig Sequence (600 bp)

>U35_48446 600 Hv_44K_v2
GTGTCATCAACTTGAACTTGCATCTGTAGCTGTAAAGTGGCTCTCATATGTACAGTTGAG
CTCGACGGGTGCCGTTCCGGCTACTCCGTCCACCACAATCCAATCTAATTTTACGCCTAC
AATTTCTTTCCTCCATGATTTGCTGGGGCCAAGGGGAAGAAGTCGCAAGCTTCGCCGCCT
TTCTCTTCCGAAGACGGTTCTGATTTGCGCGGCAAAGTAAGGTTCCGGGTTCAGGTAATG
CCTCTAAACCTGTCTTCGCCTCCGGTGTTGAAAAGCATAGCATGAGCGCGCTATGACGTA
ACACGGAAGAAAGAACCCCGCGAACTGAAGAATCGCGCTGAACAGCACCGTCGCATCTTG
TAACATGCTGACATCTCGCACGATCACGATTACATGGCGGATGAGCAAAAGGACCATCAG
AATTAGAGCAATAGACCGGCAGCATGTGGCGCCACTTGAATTTGAGGTCATGCAGTCATC
AAATTCAGCGTTCATCAGCTGCTGCTCCGCGATGGCGATCGCCAGGAAATGGGAGTCATG
GGGATCAATTCGTCCAACCCAGCTTTGCCTAAGATCCATGCCCATTTCATCTGAACAACA

Homology of Contig U35_48446 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None