barSeed - Barley Seed Development Database

Probe CUST_8585_PI390587928

Source Contig U35_24491

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8585_PI390587928	Hv_44K_v2	GGACTGATGACAATACGTTATGTGCGTCAAAATAAAACTGCAATAGTTACTTTCATCCTA	588	GeneList: lightsteelblue1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	10.252	5.801	1.109	0.931	0.769	0.821
Raw	90.003	77.822	13.832	18.245	3.441	5.490

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11992.1	1399	2e-24	526 - 585	100	60 / 60	plus	None
JLOC1	JLOC1_8006.1	789	8e-25	524 - 583	100	60 / 60	plus
Harvest35	U35_24491	664	3e-25	589 - 648	100	60 / 60	plus

Contig Sequence (664 bp)

>U35_24491 664 Hv_44K_v2
CGCAGCGCGCTGGGGACGGTGCTGGACTCAACGTGATGCGCGTGCAGGGCGGCGCGGTGG
GGGCCGTGAACGGGATGCGGCCGGACGGCGCCGTGGACGCGTCGTCGTTGCAGTCCAAGG
AGGTGTGGGTCGGGGTCACCTACGGCGTGGCCGCCGCCATGCTCCACGAGGGCATGACGG
AGGCGGCGTTCCGGACGGCGAAGGGAGCGCACGACGCCGGGTGGGGCAGGGACGGGTTCG
GGTACGCGTTCCAGACGCCGGAAGCGTGGACGTCCGACGCCGGCGGCGGGTACCGGTCGC
TGCACTACATGCGGCCCCTCTCCATCTGGGCGATGCAGTGGGCGCTATCGCCGCCGGAGC
TCCATAGGGACCTCCGGGTGGTTCCGGGTTCGGTGTCCGCCGTAGCGTCGCCAGCGGAGG
TGGACCTGGCGCGGGAGAAGTTCGAGAAGGTGGCGAGCATGCTGAAGCTGCCGGAGGAAG
TGCAGCACAAGGGGTATCTCAGAGCTATCTGCCAGGTACTCCGGCAGATGCTGCTCCCGG
AATCCTGATTCTCAGGAGTGGAACTTCCAGCTTTACAAAAGATTCTTCGGACTGATGACA
ATACGTTATGTGCGTCAAAATAAAACTGCAATAGTTACTTTCATCCTAAAAAAAAAAAAA
AAAA

Homology of Contig U35_24491 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g01940.2	915	3e-75	protein\|non-lysosomal glucosylceramidase, putative, expressed
Brachypodium v1_2	Bradi3g13487.1	914	9e-73
Arabidopsis v10	None