- Probe CUST_8568_PI390587928
- Source Contig U35_36474
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_8568_PI390587928 | Hv_44K_v2 | ACCGTGAATCAAGTGAACTTGTGATGTATTGATCGATCCGTCTCATATTTCCGCAAAAAA | 126 | GeneList: yellowgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.696 | 2.580 | 1.842 | 1.069 | 0.389 | 0.448 |
| Raw | 1753.001 | 10198.990 | 6106.750 | 5783.337 | 706.565 | 903.281 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_44080.1 | 2243 | 3e-21 | 26 - 82 | 98 | 56 / 57 | minus | ABC05164 ABC44958 |
| JLOC1 | JLOC1_28535.1 | 2268 | 2e-21 | 2194 - 2250 | 98 | 56 / 57 | plus | |
| Harvest35 | U35_36474 | 197 | 3e-25 | 127 - 186 | 100 | 60 / 60 | plus |
Contig Sequence (197 bp)
>U35_36474 197 Hv_44K_v2 ATGCCATTGGCGCCGCGGCCGGTGCTGTGTTGTGACGTGTTTCAGTGTTGTTGTGTGTGC GTGTGCGTGGGATGGAGCTCGCGGTCCGAGCATGTGGCGGGGGTGATGGATCGCCTGTAG AACAAGACCGTGAATCAAGTGAACTTGTGATGTATTGATCGATCCGTCTCATATTTCCGC AAAAAAAAAAAAAAAAA
Homology of Contig U35_36474 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |