- Probe CUST_8550_PI390587928
- Source Contig U35_36483
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_8550_PI390587928 | Hv_44K_v2 | GTTTCTGCCAGATCGCAGGCTTGGCCCTGGTCTGCTTTTCGTTGATTGAGTTTCTTCGAT | 66 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.367 | 1.523 | 1.139 | 0.760 | 0.442 | 0.346 |
| Raw | 1190.850 | 1824.930 | 1364.337 | 1357.252 | 292.341 | 248.473 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_33091.1 | 829 | 2e-24 | 759 - 818 | 100 | 60 / 60 | plus | ABC25334 |
| JLOC1 | JLOC1_21486.1 | 704 | 8e-25 | 543 - 602 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_36483 | 178 | 3e-25 | 67 - 126 | 100 | 60 / 60 | plus |
Contig Sequence (178 bp)
>U35_36483 178 Hv_44K_v2 GGGTTTCGGATTCCCACGCAGCAGATCGAGGCGGTTCCAGATTCCGCCCTGCCCGCACGA GCAGTTGTTTCTGCCAGATCGCAGGCTTGGCCCTGGTCTGCTTTTCGTTGATTGAGTTTC TTCGATAAGAAAAAGAGAAAAAAAAAGAAAAAAATAAAAGCAAAAAAAAAAAAAAAAA
Homology of Contig U35_36483 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |