barSeed - Barley Seed Development Database

Probe CUST_8524_PI390587928

Source Contig U35_48470

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8524_PI390587928	Hv_44K_v2	CAATCTTGTCTTGTATATTGTGATTACTGCCAGCGAGCCTAACTCTGTACAGTACTGTAC	3	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.664	2.811	1.181	0.738	0.384	0.416
Raw	332.115	545.030	198.912	199.752	36.208	42.766

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_44210.1	2646	2e-24	41 - 100	100	60 / 60	minus	None
MLOC	MLOC_44210.2	2612	2e-24	17 - 76	100	60 / 60	minus	None
JLOC1	JLOC1_28627.3	2587	8e-25	2389 - 2448	100	60 / 60	plus
JLOC1	JLOC1_28627.2	2487	8e-25	2289 - 2348	100	60 / 60	plus
JLOC1	JLOC1_28627.1	2587	8e-25	2389 - 2448	100	60 / 60	plus
Harvest21	ABC50285	586	3e-25	4 - 63	100	60 / 60	minus
Harvest35	U35_48470	586	3e-25	4 - 63	100	60 / 60	minus

Contig Sequence (586 bp)

>U35_48470 586 Hv_44K_v2
TATGTACAGTACTGTACAGAGTTAGGCTCGCTGGCAGTAATCACAATATACAAGACAAGA
TTGGTTGCACATTACCTTCCCTCTGCGGAAAGCAAATTGCAACTCTGAGTTTCTTTTTTT
ACATATGCATGTACATGAACAATTGAGCTAAATCTCTAATCACACCAGCAATCACAAACC
ACACACACATTGGCTCAAAAACAGCCGCTCTTGGGAGTGATCTTCCTGACGCTATCCTGG
AGAAACTGGAGCGCGCCGGGAGAAACGTAGGCCCTCTCCATTGTATTTACCTTTGGGGCC
TCGAGGATCGCCCTTGGGGGAGACAGCGCATGCTGCATTGCCCATATCGCAAGCGGGCGC
ATGTATATCAGCGATCTATAGTGGCCATCAATAGTCCATCCTTCCGGAGTTTGAAACCAA
TACCCATAGCCCTCTTCAGACCATCCTGCAAGAAAAATGCCTTGTGCTGTAGTGAAAGCC
TGATCCTCCATTCCGTGGAGCAGCATCGTTGCAGCTAAACCGTACGTTACTCCAGTCCAG
ATTTCTCTTGACTGCATACATGTCTCGTCTACCTTTCCATTTGGAT

Homology of Contig U35_48470 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g26210.2	304	2e-80	protein\|non-lysosomal glucosylceramidase, putative, expressed
Brachypodium v1_2	Bradi1g28847.1	604	1e-83
Arabidopsis v10	AT3G24180.1	950	4e-58	Beta-glucosidase, GBA2 type family protein \| chr3:8735011-8741147 REVERSE LENGTH=950