barSeed - Barley Seed Development Database

Probe CUST_8520_PI390587928

Source Contig U35_48475

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8520_PI390587928	Hv_44K_v2	GTCCATGAACAGCAAAGATAAATATAGTGCAGCTCCTTGATTTGAGCTTTATTTGTTTTG	-1	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.355	1.764	1.242	0.938	0.233	0.351
Raw	51.200	112.537	63.425	74.663	6.072	11.077

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361073	1497	3e-21	1436 - 1496	97	59 / 61	plus	None
MLOC	MLOC_20802.1	1722	3e-21	1611 - 1671	97	59 / 61	plus	None
MLOC	MLOC_20802.2	1409	3e-21	1298 - 1358	97	59 / 61	plus	None
JLOC1	JLOC1_14419.1	1800	2e-21	1247 - 1307	97	59 / 61	plus
Harvest21	ABC50293	544	1e-23	37 - 97	98	60 / 61	minus
Harvest35	U35_48475	544	1e-23	37 - 97	98	60 / 61	minus
Harvest35	U35_35731	802	6e-22	316 - 376	97	59 / 61	plus

Contig Sequence (544 bp)

>U35_48475 544 Hv_44K_v2
GTATACTTCGTTTCAAAAAACCAGATGTAGTATTTACAAAACANAATAAAGCTCAAATCA
AGGAGCTGCACTATATTTATCTTTGCTGTTCATGGACATTTTTACAATTTTCATCATCAA
GAGCACACAAACCCCTGTTGAATCTGCCGCTGCAAAGAGAAACAAAAAGTTTCTATAACT
ACATATGAAAAAGCACTCACTGACCTCATCAAGCCTCAGTTCTTCGAGGAGGCTCTTTGA
AGCAATCAACATTGCACAGGCCTATTGATCTAATCATCTCGCCAAGCCTGTCAATGCTTT
TCCTTGGTTTGTCTGTCTGTTCATTTTCATCTCTTGTCCTGTCAAATGTGTCGACACTTC
TCCTTGATCTCTCCTTCTTATCTGTGCTCGACCTTGCCTTTTCCCTGACGCCTGTACTTC
GCCGGTGTTTATATACACGTTTAGTGCTCAGCCTAGGATGCTGCTCGTGTCTTGAGCTCT
GCCTCGATGGCTCTAACCTCTGTGAGGTCATCAAATGCACCTCAGAAAGAGCAACGCTAT
CTGA

Homology of Contig U35_48475 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g38910.1	421	9e-58
Arabidopsis v10	None