barSeed - Barley Seed Development Database

Probe CUST_8510_PI390587928

Source Contig U35_8008

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8510_PI390587928	Hv_44K_v2	CCATGGGAAATAAATTACTGATGACTGTGACTTTATGGGTTATATGAGAAATTTTCTCGG	455	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5431.2	2476	7e-23	2401 - 2457	100	57 / 57	minus	ABC10893
JLOC1	JLOC1_37181.1	586	4e-23	530 - 586	100	57 / 57	plus
JLOC1	JLOC1_3495.3	2512	4e-23	2413 - 2469	100	57 / 57	minus
Harvest21	ABC17965	537	3e-25	456 - 515	100	60 / 60	plus	ABC17965
Harvest35	U35_8008	537	3e-25	456 - 515	100	60 / 60	plus

Contig Sequence (537 bp)

>U35_8008 537 Hv_44K_v2
GCCCCTACCTTCCCCAGTCTTCTTCCTCGGCTCCTCCAGATCATAATTCATCCCTGAGTT
GTTGCTGCCGAAATGGGCAGCACGGAATCCCCAGCGCCAGTGCAGACACCGGCTGCTGCT
TGCTCCATTGTGAACCAAGCCCCAGCTCCTGCCACTGACTCGAAGCCGAAGAAGAAGATA
TGCTGCGCTTGCCCTGACACCAAGAGGCTCAGAGATGAGTGCATCGTCGAGCACGGGGAG
TCTGCCTGCACCAAGTGGATCGAGGCTCACAAGCAATGCCTCCGTGCCGAGGGGTTCAAG
GTCTGATTCTTCTATAGCTAGTCCCCTGAGGACGCTGCATTTGCTTTCATGGATGTTGCA
GAACTTGCTATTTGAGATTCAGTTAGAGGAGTTGTCTTGTTTTTCAATGTTGTGCCTGTG
GTTTAATGGTTAGAAAGCTTTAAGAGTACCTGTTTCCATGGGAAATAAATTACTGATGAC
TGTGACTTTATGGGTTATATGAGAAATTTTCTCGGTGTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_8008 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None