barSeed - Barley Seed Development Database

Probe CUST_8501_PI390587928

Source Contig U35_8018

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8501_PI390587928	Hv_44K_v2	GTGACACAGCTAAATGTACTAAGCTTATGTTGGAAAGACTATCTATAATTAACTCCGTTG	638	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.096	1.560	1.245	1.006	0.435	0.470
Raw	270.786	598.614	416.832	528.796	77.811	94.876

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364882	2719	2e-24	2655 - 2714	100	60 / 60	plus	ABC18528 ABC37467 ABC44309
JLOC1	JLOC1_8480.1	1633	2e-21	1454 - 1513	97	58 / 60	plus
Harvest21	ABC18528	720	3e-25	23 - 82	100	60 / 60	minus	ABC18528
Harvest35	U35_8018	720	3e-25	639 - 698	100	60 / 60	plus

Contig Sequence (720 bp)

>U35_8018 720 Hv_44K_v2
CTAGAGAAAAAATTGTTCATGTTGTTGAGAAGCTACATTGTCGTGCGAATGGGGAAACAG
AAATCGCTATTCGTGTGTCTGGATCATTTATCACGGGCAACCAATTCCTAATATTTGGTG
AAGGGTTGCAAGCTGAAGGGATGCCCAGTCTGGACGAAATTGATATCGACATTCCAAGCA
AGCGGGTAGGCCAGTTCCGGGAGCAGTTCACCGTGCATCCAGGGACTTCCATGGGGTGCT
ACTACATAGCAAAGCAAGACCTCTACATCATCCAGTCATGAAAACAATGTATATAGTGTA
AGTTATGTTCCATTTGTGATGTCAATGATTCCAGTTCATGATGAAAGCTATGTCCTTAAA
TGATTCCACGCCTCGTGGCCCCTTAACTTGGACAGGCTTCAGATCACAACACAGTCCTGC
TACCATTGACATTGATTCCATTTCTCCTTGATGCGAGCAAGCAAAGTTGTAGCTGAAACA
TAGCTCTTAATTGTTTTTTGTAAGGTGGTAAGGAGAATGAAGTGATTCTAATGATTGGTG
TGCATAGATAGAGATACTCTTGACACATGGCACGGGTGTAGTTGAGGCTGCTCAATTCCT
GTTGTAGATGAGAAGATTGCGCGCGTGTGTGCTAATAAGTGACACAGCTAAATGTACTAA
GCTTATGTTGGAAAGACTATCTATAATTAACTCCGTTGGTACTAAAAAAAAAAAAAAAAA

Homology of Contig U35_8018 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None