barSeed - Barley Seed Development Database

Probe CUST_8500_PI390587928

Source Contig U35_8019

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8500_PI390587928	Hv_44K_v2	AGATTGGATAATCTTGCTTCATGTTATTGTGCCCTTAAATCCCTCATGGACTCTTCCAAG	911	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.449	0.618	1.541	1.776	1.037	0.994
Raw	14.482	31.767	66.294	121.033	25.278	25.501

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355479	1771	2e-24	939 - 998	100	60 / 60	plus	ABC16906
MLOC	MLOC_1181.1	1217	2e-24	763 - 822	100	60 / 60	plus	ABC16906
MLOC	MLOC_1181.2	1222	2e-24	768 - 827	100	60 / 60	plus	ABC16906
MLOC	MLOC_25135.1	809	3e-21	689 - 745	98	56 / 57	minus	ABC16906
JLOC1	JLOC1_731.2	1211	8e-25	766 - 825	100	60 / 60	plus
JLOC1	JLOC1_731.1	1216	8e-25	771 - 830	100	60 / 60	plus
Harvest21	ABC16908	974	3e-25	912 - 971	100	60 / 60	plus
Harvest35	U35_8019	974	3e-25	912 - 971	100	60 / 60	plus

Contig Sequence (974 bp)

>U35_8019 974 Hv_44K_v2
CGCGTCGTCATCTCCATACCTCGCCGCCGATGGCGCTGCTCCGCCTCCACCTCCTCCGTC
CTCCACATCCTCCGCTCGCTGCCGTCTCCTCTCCCTGGCGCCGCGCCCTCCCAGCCACCA
GGCCCGCCGCCCGACCCGCCTCCCGCCTCCTCTGCTCCAACCGCCCCGCCTCGCCCTCCA
TCGTCGGCGGCCTGCTCGACTACCTCAACGAGTCATGGACGCAGTTCCACGCCACCGCTG
AGGCCAAGAAGCAGCTGCTCGAGGCGGGGTTCGAGCTGCTCAGCGAGAACGACGACTGGA
ACCTGCAGCCCGGTGGCCGCTACTTCTTCACCCGCAACATGTCCTGCTTGGTCGCCTTTG
CAGTCGGGGAAAAGTACAGAGTTGGAAATGGTTTCAATATAATTGCAGCCCACACTGATA
GTCCATGCCTCAAGCTGAAACCGAGATCTGCTTCCTTCAAATCTGGCCATCAAATGGTAG
GTGTACAGACGTATGGAGGCGGGTTGTGGCACACATGGTTTGATAGAGACCTAACATTGG
CCGGGCGAGTCATCCTCAAGGCTCCAGATGGTTCATTTAAGCATAAGCTTGTCAAAGTGA
ACAGACCACTCATTCGCGTACCGACACTGGCTATACATCTTGACCGCACAGTGAATTCTG
AAGGATTCAAGCCTAATCTAGAGAGTCATCTGGCTCCACTTCTTGCAACCAAATGTGAAG
AGACCACTCTCAGTTCTGATGACAAAAAAGGTTCAAGTTCCACAAAGATTGTCCATCATC
CACTACTATTGCAAGTTCTTTCAGAAGAAATCGGTTGTGGGTCAGATGAAATTATCGGTA
TGGAGTTGAACGTGTGTGATACCCAACCTAGCTGTCTTGGTGGAGGGAAGAACGAGTTCA
TTTATTCCGGTAGATTGGATAATCTTGCTTCATGTTATTGTGCCCTTAAATCCCTCATGG
ACTCTTCCAAGATA

Homology of Contig U35_8019 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g73680.1	526	2e-163	protein\|aspartyl aminopeptidase, putative, expressed
Brachypodium v1_2	Bradi2g61860.1	521	4e-173
Arabidopsis v10	AT5G04710.1	526	3e-138	Zn-dependent exopeptidases superfamily protein \| chr5:1357273-1360128 REVERSE LENGTH=526