barSeed - Barley Seed Development Database

Probe CUST_84_PI390587928

Source Contig U35_48886

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_84_PI390587928	Hv_44K_v2	GTGTACAAATGAGATAATTTACCTTACATGGAGCTTTTCAGCGTATCTCTGTGGTTTTTT	113	GeneList: floralwhite MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.439	0.505	1.949	3.829	1.392	0.901
Raw	3.776	6.583	30.890	83.154	12.147	8.054

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15586.2	1225	2e-24	80 - 139	100	60 / 60	minus	None
MLOC	MLOC_15586.3	1257	2e-24	80 - 139	100	60 / 60	minus	None
MLOC	MLOC_15586.1	1239	2e-24	95 - 154	100	60 / 60	minus	None
MLOC	MLOC_15586.4	2821	2e-24	64 - 123	100	60 / 60	minus	None
JLOC1	JLOC1_10702.2	1257	8e-25	1087 - 1146	100	60 / 60	plus
JLOC1	JLOC1_10702.1	832	8e-25	662 - 721	100	60 / 60	plus
Harvest35	U35_48886	498	3e-25	114 - 173	100	60 / 60	minus

Contig Sequence (498 bp)

>U35_48886 498 Hv_44K_v2
TTTTTTTTTTTTTTTTTATGTTTTCAATTGCAATTGCCTTTTTTCATGTAGCTCCATAAC
CACTAAAAATATTTACAAGGCTTCATTATAAAAGAAATAAAATAAAACAAGAAAAAAAAC
CACAGAGATACGCTGAAAAGCTCCATGTAAGGTAAATTATCTCATTTGTACACCATAGAT
CGAGAAGTTTAAAATTCAAAATATGGCAAAACTTTTAATCACAAACTTTTTGCTACCTGA
AGATGGGCGCATACAGCATTCCAGCTGTGAAAGCGACTGGAAGAGCAATCAGGATGACAG
GCACCTCAGAAACTTGGGAATCTTCCTTCTTTCTTTGGTTTTGTCATCATTTTTGCCATG
AACTGCCTCCATGCTATCGCGATTTGGCGTAAATGATGGCGGTGTCGGGGTGCGAGATCT
GCTGTTGTTATTTACAGGGGAAGGTGAGAATGGTGGCGTTGGATCAGTAGTCGTCGCCGC
CGTAACTTCTTTGCCATC

Homology of Contig U35_48886 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None