barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_8492_PI390587928Hv_44K_v2TGACCTCATGAAGCAAGCATTGATGCTTCACCCTCTGGTGCTTTCTAAGAGTCCTTCAAA695GeneList: tan
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.7630.7481.7212.2991.2320.827
Raw 34.01248.896103.450221.07042.76730.816



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
Harvest21ABC199457563e-25696 - 75510060 / 60plusABC19945
Harvest35U35_80277563e-25696 - 75510060 / 60plus



Contig Sequence (756 bp)

>U35_8027 756 Hv_44K_v2
GGAAGAACCCTCCTTGTATCTCCACCTGGCTTCTGGCCACCATGGGATAAGTCAATGTCA
ATGAATCTTGTTGAGACAAAGGGCAGTTTAAATTACTTCAGGTACGAATATGATCCTTCT
GTCAGCCATGTGCAGGAATTGTTTGAAGCTGCCAAATCAGCCAATGACCTCAATGCCATT
GCCGCTATATTAGCAAAATACCCCTACCATCCAGACTCGTTATTGACATTTACTGATCTG
TTCAAATATTCTGGAGAACATCAATCATCAGCAGACGCTGTCGAGAAGTGTCTGTTTGCA
CTGGAGTGTGCTTGGCATCCATTGTTTAATCCACTGCAGGGCAACTACCAGTTGAAATAC
GGCCATGACATAAATAAGCCATTTTTTACAGCCCTTTTCAGTCACATGAAAAACCTGGAT
AGGCGCGGTTGTCACCGTTCAGCTTTAGAGGCCTGCAAGTTTCTTTTGTCATTGGATTCT
GACGACCCCAAGGGTGCTCTGTTTTGCATTGATTACTTTGCTCTAAGATCGCATCAGCAC
AAATGGTTAGAGCAGTTTGCTGAAGAGTACCAGTGTGATAACTCCCTTTGGCTGTTCCCT
AGTTTCTCCTTTTCTCTAGCCATTGCACGGTTTTATCTTGAACGTGATGCGGCATCTGAG
GATGTTTCTGATCATGCTGACAAGTCAACAGCTATTGACCTCATGAAGCAAGCATTGATG
CTTCACCCTCTGGTGCTTTCTAAGAGTCCTTCAAAG



Homology of Contig U35_8027 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os09g33970.16348e-135protein|expressed protein
Brachypodium v1_2Bradi4g35140.16307e-143
Arabidopsis v10AT2G46900.16272e-81CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix, Nulp1-type (InterPro:IPR006994); Has 2929 Blast hits to 2464 proteins in 333 species: Archae - 2; Bacteria - 151; Metazoa - 913; Fungi - 372; Plants - 141; Viruses - 47; Other Eukaryotes - 1303 (source: NCBI BLink). | chr2:19269678-19271987 FORWARD LENGTH=627