- Probe CUST_8490_PI390587928
- Source Contig U35_8029
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_8490_PI390587928 | Hv_44K_v2 | GGAGATGATCCTCATCTGCCAGAACCTTCGCAACAACCTGCAGCACCCCAACGAGTACAT | 352 | GeneList: skyblue3 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.378 | 1.530 | 1.518 | 0.944 | 0.916 | 0.439 |
| Raw | 23.170 | 28.659 | 34.009 | 28.773 | 11.321 | 5.193 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_54627.4 | 2851 | 2e-24 | 350 - 409 | 100 | 60 / 60 | plus | ABC04534 ABC04535 |
| MLOC | MLOC_54627.1 | 3422 | 2e-24 | 2999 - 3058 | 100 | 60 / 60 | minus | ABC04534 ABC04535 |
| MLOC | MLOC_54627.2 | 3649 | 2e-24 | 3185 - 3244 | 100 | 60 / 60 | minus | ABC04534 ABC04535 |
| MLOC | MLOC_54627.3 | 3385 | 2e-24 | 2969 - 3028 | 100 | 60 / 60 | minus | ABC04534 ABC04535 |
| JLOC1 | JLOC1_35171.3 | 3388 | 8e-25 | 349 - 408 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_35171.2 | 3423 | 8e-25 | 361 - 420 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_35171.1 | 3636 | 8e-25 | 349 - 408 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_8029 | 493 | 3e-25 | 353 - 412 | 100 | 60 / 60 | plus |
Contig Sequence (493 bp)
>U35_8029 493 Hv_44K_v2 AACCGGTCAACCCGCCCAGATCCAGATCCACTCTGCCCAGGCCTGATCCAACCACCATCA ACCCACCCGCCGGCGCCATGGACAAGCCGTCGACGCTGCTTGTCCACTTCGACAAGGGCT CCGCCGCCATGGTGAACGAGATCAAGGCGGATCTGGAGGGCAGCGACGTCGCCGCCAAGG TCGAGGCCATGAAGCGCGCCGTCATGCTCCTCCTCAATGGCGAGACACTGCCTACGCTCT TCATCACCATCGTCCGCTACGTCCTCCCTTCCGAGGATCACACCATTCAGAAGCTGCTGC TCCTCTACCTCGAGATCATTGACAAGCGCAACGCCGCCGGCCGCGTTCTCCCGGAGATGA TCCTCATCTGCCAGAACCTTCGCAACAACCTGCAGCACCCCAACGAGTACATCCGCGGCG TCACGCTGCGGTTCCTCTGCCGCCTCTCCGAGCTGGAGGTGCTTGAGCCGCTCGTCCCTT CATTCTTAAGATC
Homology of Contig U35_8029 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g17430.1 | 951 | 7e-69 | protein|coatomer subunit beta-1, putative, expressed |
| Brachypodium v1_2 | Bradi2g10950.1 | 951 | 4e-71 | |
| Arabidopsis v10 | AT4G31490.1 | 948 | 3e-61 | Coatomer, beta subunit | chr4:15269460-15272693 FORWARD LENGTH=948 |