barSeed - Barley Seed Development Database

Probe CUST_8489_PI390587928

Source Contig U35_8030

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8489_PI390587928	Hv_44K_v2	GTGTTGTGGTGAATATATGCGGTTGTACTTGTGGTAAGCGATGATATGAAATCATATAAT	382	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.666	3.376	1.222	0.817	0.845	0.753
Raw	30.397	46.837	13.788	14.662	3.673	3.651

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC17275	566	3e-25	125 - 184	100	60 / 60	minus	ABC17275
Harvest35	U35_8030	566	3e-25	383 - 442	100	60 / 60	plus

Contig Sequence (566 bp)

>U35_8030 566 Hv_44K_v2
CATGCCAAGTCTGGGGGCTGTGGTTCAGGCTGTGGTGGCGGCGAATGTGGCGGCATGATC
ATGGAAGGCTCCAAGATGAGCCATGCCATGTCTGGGGGATGTGGTTCAGGCTGTGGCGCC
GGGTGCGGTGGCGGTGGATGTGGTGGCATGATCATGGGAGACTAACCATGCCAACTCTGG
TGGCCATGGTTCAGGTTGTGGCTCTGGCTGTGGCAGCGTGCTCAACACAGCCTCATAAGC
ATAACTATGCCTGAGGTGGCCGGTGTGCGCGTGGTGACCGTCGGCGATGGCATGCTACAC
GCTCTAGTCGGAGATGAAGTCGAATAAAAACCACACACTCTGTCCTGTGCAGTTTACCAT
GCCTCTACTCACAGCGCACAATGTGTTGTGGTGAATATATGCGGTTGTACTTGTGGTAAG
CGATGATATGAAATCATATAATTTGTTATTATTGAGTACTTTTCATGCATAAGCATAACT
ATGGCGGCATCACATGTTTCAACAAACCTTTAAATTTGACACAGGAGGCCCGGTCGATGA
TCTTTGTGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_8030 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None