barSeed - Barley Seed Development Database

Probe CUST_8488_PI390587928

Source Contig U35_8031

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8488_PI390587928	Hv_44K_v2	GGTGTACTACCAAGCGACTTCTACACTCAAAGATATAAAATAAAAAGAGAGTTCTTGCAA	484	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16687.1	430	7e-23	214 - 270	100	57 / 57	plus	ABC26386
JLOC1	JLOC1_11513.1	419	4e-23	218 - 274	100	57 / 57	plus
Harvest35	U35_8031	559	3e-25	485 - 544	100	60 / 60	plus

Contig Sequence (559 bp)

>U35_8031 559 Hv_44K_v2
GAGGGGCTCACGCCGTCCATGTACGCCCAGGCGCTGGCGGTGGCGAACGCCAGCGCGGGG
CTGGTCGGGTACGGGCCGGTGCTGGCGGAGCTGGCGGACTGCACGTTCGTGCGGCGGGCG
TTCGAGGCGGTGGCGGCGGACAACTGCCCCGGGCTGAGGTGGCACAGCGGCAGCGTGTAC
CGGTCGCTGGTGACCGTGGCGGCGGCGGTGGCGGCGGCCGTGGTGGCCTGGGTGGTGCAC
GCCAAGGAGCGGCGGCGGCGGCGCGAGGCCGTGCGGTTCCGGGTGTCGCCGTACCGGCTG
CCCATCGAGGACAAGTCGCTGCTCAAGAGCCCCCGCCGGCCCTACCGGCGAGCCGAGAGC
GGCGGGCTCATCGGCAAAGGCGGCTGGTGATCCGATCCGATCCCACGGTGCATCGTGACG
GACAGGGCGGCCACGTAGTTGAGCAAGCCTAGTGGAGCTGGATATGTGTATATATATATA
ATTAGGTGTACTACCAAGCGACTTCTACACTCAAAGATATAAAATAAAAAGAGAGTTCTT
GCAAAAAAAAAAAAAAAAA

Homology of Contig U35_8031 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None