barSeed - Barley Seed Development Database

Probe CUST_8487_PI390587928

Source Contig U35_8032

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8487_PI390587928	Hv_44K_v2	TCCCAACGAGATGCTACAGAGTGACGGAAATTGAATTCACCTGTATTCTTTACCTGCAAA	549	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.375	1.520	1.194	0.903	0.345	0.302
Raw	1914.900	3299.617	2282.220	2713.762	364.246	346.056

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38760.1	1033	6e-24	881 - 939	100	59 / 59	plus	ABC21653
JLOC1	JLOC1_25230.1	917	3e-24	730 - 788	100	59 / 59	plus
Harvest21	ABC21653	623	3e-25	15 - 74	100	60 / 60	minus	ABC21653
Harvest35	U35_8032	623	3e-25	550 - 609	100	60 / 60	plus

Contig Sequence (623 bp)

>U35_8032 623 Hv_44K_v2
ATGGTATCTAATCCAATGAATCAAGCCAGCCCTCGACCACCAGCAATGCCAGGCTCAATG
CCTCCGGCCAGCATGCAAGCGTTTTACGGCAATAACATGCAGGGGCATCCAGCCCAGATG
GCTTTCTTGCAGCAGCAACAGCGGCAGCAGCAGCAGATGCTCTCATTTGGGCCGCGCCTG
CCGCTCTCAGCTATCCACCCTGGCTCATCGTCGTCAGCAGCACCCAGCGTCATGTTCAAC
CCGGGCATGCCCAGTTCGGCTACCCCTAACCATCATTCCATGCTGAGACCACCATCCTCG
GGGAGCAACAATTCAAGTTTTGGTTAAGGAGAGATTATTTGCCTCATCCCAAGTTACCCG
TGTTTGTAGCTCCGATGACAACCATTGTAATTCAATTGCACAATCACAGGTAGATGCATT
TAGTCTTTTAGGTTTCCCATCCTAGTTCCCTTTGTCCCGGAATCTCTCGGCTATCTCATA
AGATGAATGTTTGATAGGTAAGATTGTGTTATAGAGAAGTGAGAGTTTCACCCTGGTGCA
AGTAATTGTTCCCAACGAGATGCTACAGAGTGACGGAAATTGAATTCACCTGTATTCTTT
ACCTGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_8032 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None