barSeed - Barley Seed Development Database

Probe CUST_8484_PI390587928

Source Contig U35_8036

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8484_PI390587928	Hv_44K_v2	GTTGTATTCAAATACAGCTTGCGCATGCCGTTATAATATCAGGTCATATTGTTGATGACC	715	GeneList: darkred MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.855	1.542	1.605	1.008	0.350	0.357
Raw	798.627	2214.762	2013.300	2011.424	238.339	269.896

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6737.2	1416	2e-23	1352 - 1409	100	58 / 58	plus	ABC47735
JLOC1	JLOC1_4402.1	1455	1e-23	1280 - 1337	100	58 / 58	plus
Harvest21	ABC47735	408	4e-24	17 - 74	100	58 / 58	minus	ABC47735
Harvest35	U35_8036	813	3e-25	716 - 775	100	60 / 60	plus

Contig Sequence (813 bp)

>U35_8036 813 Hv_44K_v2
GTTGCAATTTACACACCTGTGAGAGAGGATGGGGTTGAGGGACGACCTGTTTCTGCTTCA
ACAGAGCCGATTGCTGTTGAGCCCGAAATTTACAAGGAAGTAAAACAGAAGCTTGACGAA
GGTTCTGTCAAGTTTGAGGTTTTGTGTGACAAGGACCGAACACCAAAAAAGGCACAAGTG
ATGGGACATTTGGAGCGGAGAATTTTGGAAGTCAACAGAAAGAGAATAAAAGTTGTAAAG
CCGGGATCCAAGACATCATTTGCAACAACTGAAGCCCGAGGGACATACACTCCCCCATTC
CATGTTGAGCTATATCGTAACGATCAGCACCGTTTCAAGATTGTCGTTGACGGTGATAAC
GAAGTTGACTTGATGGTTCAAACGCGGCATATGCGAGATCTTGTCATTCTGGTGATCAGG
GGCCTCGCCCAGAAGTTCAACAGCACCTCCCTCAACTCGCTTCTCAGGATAGAGGCGTGA
AAACATGATATACCTGACAATGTAAACCAATGAGGAACGTATGTTGTTCAATACCGGTGT
TGTAATTTGTTGGTTTGTAGTGCGTATTTTGTAGGATTTGTAGCGTGTCAGCTTGTGTGT
GATCCTTTTGTTCTTGTAAAGAACCAACACACAAGAGCTAATAGTGGCCCTTGTGACTTT
GGTTTTTTACATGTCTCATGAAATGTACATAGGGTTTTCAGAGTGGGAGAGTGGTGTTGT
ATTCAAATACAGCTTGCGCATGCCGTTATAATATCAGGTCATATTGTTGATGACCAAAAA
AAAAAAAAATAATAAAAAAAATAAAAAAACTCG

Homology of Contig U35_8036 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g05470.1	821	3e-93	protein\|AIR9 protein, putative, expressed
Brachypodium v1_2	Bradi1g58340.1	1666	4e-94
Arabidopsis v10	AT2G34680.1	1708	2e-72	\| Symbols: AIR9 \| Outer arm dynein light chain 1 protein \| chr2:14616947-14628300 REVERSE LENGTH=1708