barSeed - Barley Seed Development Database

Probe CUST_8481_PI390587928

Source Contig U35_8039

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8481_PI390587928	Hv_44K_v2	TCACCGTCAACAGCAACTACATCTCCATGCTGGCCGCGCTGAAGCGGTACGGCGACGACA	550	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.183	1.131	1.160	0.768	1.177	1.048
Raw	5.682	8.830	9.114	7.031	2.821	2.848

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366148	4863	2e-24	3642 - 3701	100	60 / 60	plus	ABC08503 ABC10956 ABC35217
MLOC	MLOC_52174.3	2194	2e-24	1203 - 1262	100	60 / 60	minus	ABC35217
MLOC	MLOC_52174.1	2921	2e-24	2214 - 2273	100	60 / 60	minus	ABC35217
JLOC1	JLOC1_33397.1	2211	8e-25	734 - 793	100	60 / 60	plus
Harvest21	ABC20353	825	3e-25	442 - 501	100	60 / 60	plus
Harvest35	U35_8039	934	3e-25	551 - 610	100	60 / 60	plus

Contig Sequence (934 bp)

>U35_8039 934 Hv_44K_v2
ATCCACACACTCACTCCACTGCGCACAATTCCACACTCAGCAATGCCTCCTCCCCTTCGC
ATCCTCACCCTCCTCCTCCTCCTCCTCCTCCACCTCCCCTCCGCCCTCTCTTCCCACCAC
CACAAAGCCCCGGCGCCTCCTCCGGCGGCCAAGTACGCGGCGTCGCTCCCCGTCCTCCTC
GCCTGCAACGCCACCCGCTTCCAGCCCGCCTGCGTCGCCACGCTCTCCGCCGCCAGCGCC
ACCGCCGCGTCCTCCGCCTCCGACCTCCTCGCCGCCACGCTCTCCGCGCTCCGCGCCCGC
CTCCCGCCGGCCGTCTCCACCGCGCGCTCCGTCCTCGCCTCCTCCAAGAACGTCAACCTC
TCCGCCGCCGCCACCAACTGCCTCACCGCCCTCTCCCTCTCCTCGCGCCGCCTCTCGCCG
CCGCCCTCGCCGTCCGCGCTCATGCCCGCCTCCGCCGCGCTCCTCCACCTCTACGACTGC
TGGTCCGCCTACAAGTACGTCAACTTCTCCCGGACCATCTCGGACGCCATGGCGTACCTC
AACGACTCCATCACCGTCAACAGCAACTACATCTCCATGCTGGCCGCGCTGAAGCGGTAC
GGCGACGACACGTCCCGCTGGACGCCGCCGCAGACGGAGCGCGACGGGTACTGGCCGCCG
CCCGCGGCGTCCAAGGCCGACGTGGACGCGCTCGGCGTGCCCAAGGGGCTCCCCGCGGAC
GCGACGGTGTGCGGCGCCGGGTGCGACTACAAGACGGTGCGCGAGGCGGTGGCGGCGGCG
CCGGACAACGGGGGCGACCGGTTCGTGGTGCGCGTGAAGGAGGGCGTGTACAAGGAGACG
GTGAGCGTGCCGTGGGAGAAGACCAACCTGGTGCTGGTCGGCGACGGCATGGGCAAGACG
GTCATCACCGGCGACCTCAACGCCGACACGCCCG

Homology of Contig U35_8039 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g65790.1	541	2e-102	protein\|pectinesterase, putative, expressed
Brachypodium v1_2	Bradi2g56820.1	547	1e-101
Arabidopsis v10	None