barSeed - Barley Seed Development Database

Probe CUST_846_PI390587928

Source Contig U35_10891

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_846_PI390587928	Hv_44K_v2	TAAATCTCATCGAGGCTGCTCCATCTCTCGAGGCATTTGATGTTGAGATGTTTGAACATC	620	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_17206.1	2737	2e-24	2028 - 2087	100	60 / 60	plus	ABC21425
MLOC	MLOC_17206.2	2457	2e-24	1748 - 1807	100	60 / 60	plus	ABC21425
JLOC1	JLOC1_11883.3	2572	8e-25	1698 - 1757	100	60 / 60	plus
JLOC1	JLOC1_11883.2	2852	8e-25	1978 - 2037	100	60 / 60	plus
Harvest21	ABC52458	661	3e-25	501 - 560	100	60 / 60	plus
Harvest35	U35_10891	781	3e-25	621 - 680	100	60 / 60	plus

Contig Sequence (781 bp)

>U35_10891 781 Hv_44K_v2
GAAGTCTACCTATCGTTGAAAAGAGCTGAGGTGCTCTCCCTTCCAAAACTAGAGTGGATC
CGTTGGCAGGCTTGGTTGTTTTCCGAGGCCCCCTTGTGTTTGGGTTCTGTTCCATCACTC
AAGGAATTGTCCCTTGTCCGTGATGCAACTATCATTCACCAAGACTTTAGTTTAAGCCAG
GTTCTAGATGGTGCCACAAACATACATACTCTAACCTTAGACTTTCGAGGAGAAAAGGTA
ATTTTAGAAGATAGCTGTTATATTGTGGTTTTGTGCTATTTCATTTGTAAGAACTTTATG
TTGGAACAACACTGGGATTGTTCTAGTTTTGCTGGCTCATTCCTTGGCCAAGTTATTTGC
TTTTGTTTATAATTATAATAATTTCTATGAACCATAACTTTATTTATTTATAATTGATCA
AGTTCTAGTTTGCAAATGGTTAACCTGGTCAACACATACCTTGCCTCTATATACATACAA
ATATACAATTGTTAGATTCTTTTTTTGTGTGCATCAGATCTGGATGCAACCAGAAGGAAA
ACAACTCTGCATTGCATTCAACAAGCTAAGAAAGCTGTCTATTCATGGTATCTTTATCAA
ATTTGACCTGTTATGGACATTAAATCTCATCGAGGCTGCTCCATCTCTCGAGGCATTTGA
TGTTGAGATGTTTGAACATCCATGCCTGGAGGGTGATGAAGAAAGAAAAAGACGGTTTGG
TGCTCGGAGATTGGAACCTTCATGGAAGTTGCTTGGATTCACAAGCTGTCACAAGTGGCA
A

Homology of Contig U35_10891 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None