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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_8460_PI390587928Hv_44K_v2GCCGGCCTCTGAATACAGTTTTGTAAGTGCAATTCTCCAGGAATCTGAATTCTATTTCTC607GeneList: green
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.0921.3241.2390.9480.3220.292
Raw 938.1051786.9701460.0971780.344209.970206.482



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK35735712263e-221131 - 11899858 / 59plus ABC22088
MLOCAK35736811653e-221106 - 11649858 / 59plus ABC22088
MLOCMLOC_24208.314593e-221259 - 13179858 / 59plus ABC22088
MLOCMLOC_24208.213263e-221246 - 13049858 / 59plus ABC22088
MLOCMLOC_24208.411333e-22933 - 9919858 / 59plus ABC22088
MLOCMLOC_24208.511063e-22906 - 9649858 / 59plus ABC22088
JLOC1JLOC1_16664.210441e-22930 - 9889858 / 59plus
JLOC1JLOC1_16664.110711e-22957 - 10159858 / 59plus
Harvest21ABC220885243e-2524 - 8310060 / 60minusABC22088
Harvest35U35_80606903e-25608 - 66710060 / 60plus



Contig Sequence (690 bp)

>U35_8060 690 Hv_44K_v2
CTAAATATTTAGCTCAGCATTTTTGTAATCCTAGTCTTGGTAGTATTAAGTTTTCTAGTT
TAGTCGGTACTCTACTTCATGTAAACAGCCGTTTCTTATGCTAATTTTCAATATGCATAC
CAGGATGATTCCTTTGCCTGCTCGTGTTGCCTTCATGTCCTCTTGTTCCATCTTTTGGAA
CTTCTATTTGTCGACCACAATGAACAAATGAGCCTCTAGTTCTCATCTTCAGGTCAGTTC
TTGTAGTTCCCATCTTCAGGTTAGTTCTTGCTACAACTCAGAATCTCTGATGATTACTCT
ATGCGCGGGTACATTTTGACAAAAGAGTCTTATTGTTCAGATCTATTCAACTGCAACAGA
GGAGGATCTGAAAGGGCTTCTTTCCTATTATATGTAGTATGGCGGTGGTGCCTTGGGCAA
TTCCGGCGGTGGTCTCTTGAGTTGGCAGGCATTATTGCAGATGATCCATAAAGTATGTGG
ATCCGGTTTGGAGAAATTACAGTTTTGTCTAAACATCTATGAGCATGTAGCTCTAGTTTG
ACAGTGCAAGTGTTGTAATTTGTATCATTTGTTCAGTGACCTTCAGTTATATGACAAAGA
CATTAGTGCCGGCCTCTGAATACAGTTTTGTAAGTGCAATTCTCCAGGAATCTGAATTCT
ATTTCTCAAAATTAAAAAAAAAAAAAAAAA



Homology of Contig U35_8060 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None