barSeed - Barley Seed Development Database

Probe CUST_845_PI390587928

Source Contig U35_10892

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_845_PI390587928	Hv_44K_v2	TGACTGATTCTTACGGGAATGCACGACCCATAGTTGGTGGATTTGTGATGCAAACATCAT	603	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363364	1589	2e-24	613 - 672	100	60 / 60	plus	ABC11035
MLOC	MLOC_7576.1	1571	2e-24	690 - 749	100	60 / 60	minus	ABC11035
MLOC	MLOC_7576.2	1607	2e-24	690 - 749	100	60 / 60	minus	ABC11035
JLOC1	JLOC1_5005.2	1337	8e-25	632 - 691	100	60 / 60	plus
JLOC1	JLOC1_5005.1	1372	8e-25	667 - 726	100	60 / 60	plus
Harvest21	ABC38144	580	3e-25	518 - 577	100	60 / 60	plus
Harvest35	U35_10892	666	3e-25	604 - 663	100	60 / 60	plus

Contig Sequence (666 bp)

>U35_10892 666 Hv_44K_v2
CGACCTCTTCCCTCGGTCAGTCACCCCCACAAACTCCGACGGCGATAATGCTCCTGGTCG
ACGGCGAACCCGTCCCCTGCTCCTCCCCCGCGGGGAGCAGCGGGAGCGAGCTTGTGGCGG
CGCTCATGGGGAACCCCGGGCTGCGCGCCGCGTCCGAGCGGCTCAGGGCCGCGCCGGAGA
AGCGGGTCCCGTCTGGGCCGGAGGGCCCCAGGCACGTGTACGTGTTCCAGCGGGAGTTCG
CCACGGTGGATCCGGCGCGCGTCGAGTTAGTGGGCACAGATGAGATGACTACATGTGTGG
GTGTTGCAATTCGCAACAACAAGACTGGAATGACTTCCATTAGCCATATGGACTTTCCAA
AGATTGTAGAAGGAGGGTTCAAACAGATGCTAGAATTACTTGGTGCTGATGACGAACCAT
TTGATCTTCATCTGATTGGTGGCTTCGATGATGCTTCTACAAAGGTAGTCCATTCTTCCG
GAGGAATGCACAACGTACAGGAAGGGTACTCCCATCCACTTTGTTGCAAGATAGTTGAAG
TACTGCATAAATCCCAGCAACGGTTCCACCTCCGCTCTTTCTGTGTGCTTGGAATCAACA
CTATGACTGATTCTTACGGGAATGCACGACCCATAGTTGGTGGATTTGTGATGCAAACAT
CATCTG

Homology of Contig U35_10892 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g41390.4	282	1e-114	protein\|N-terminal asparagine amidohydrolase, putative, expressed
Brachypodium v1_2	Bradi1g35910.1	339	3e-120
Arabidopsis v10	None