barSeed - Barley Seed Development Database

Probe CUST_8459_PI390587928

Source Contig U35_8061

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8459_PI390587928	Hv_44K_v2	CACCACGAATTAAGTTCTATGGCATATATGTTGAAATTCCAAAGTTGACCATGAGAATGA	441	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58449.1	1816	2e-24	77 - 136	100	60 / 60	minus	ABC22260
JLOC1	JLOC1_37975.1	1773	8e-25	141 - 200	100	60 / 60	minus
Harvest35	U35_8061	534	3e-25	442 - 501	100	60 / 60	plus

Contig Sequence (534 bp)

>U35_8061 534 Hv_44K_v2
ACGGCGTGTGCACGGACGACACGCAGTGCAGCTGCCCCGACGCGGCCAACTTCCGGGCGG
TGGACTTCCGGAGGCCCAACCGCGGCTGCGTCCCGACGAGTCCACCGCCGACGGCGTGCG
GCTCCTCGTCGTCGCCGGGGCGGCGCGCGCAGCACCGGCTGGTGTCGCTGCCGGGCACGG
GCTACTTCAACGACCACGCCACGAGCATGCGGGCCGTGGAGCGGGTGGGCGAGGAGGCGT
GCAAGAAGGCGTGCCTGGACGACTGCGCGTGCGCGGCGGCGCAGTTCTACTACGGCCCCA
ACGCCGGCGACGGGTTCTGCTACCTGCAGTCGGAGGTGTTCTCGATGCAGACGGTGCGGC
CCGAGGTGGTGCACTACAACTCCACCATGCACATCAAGGTGCAGGCCGAGTCAGCCAGGA
TCTGATTACTCCCACCCTGAGCACCACGAATTAAGTTCTATGGCATATATGTTGAAATTC
CAAAGTTGACCATGAGAATGAAATAATCTTTTCTCCAAAAAAAAAAAAACAAAA

Homology of Contig U35_8061 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None