barSeed - Barley Seed Development Database

Probe CUST_8453_PI390587928

Source Contig U35_8067

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8453_PI390587928	Hv_44K_v2	ACAACAGATCTGCCCATGAGTGAGGAACTCAACCGGGACTACGAGATCGGGGAGGAGGTA	41	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248373.1	1296	2e-24	43 - 102	100	60 / 60	plus	ABC10338
MLOC	MLOC_52665.1	440	2e-24	126 - 185	100	60 / 60	minus	None
JLOC1	JLOC1_33764.1	389	8e-25	121 - 180	100	60 / 60	minus
Harvest35	U35_8067	453	3e-25	42 - 101	100	60 / 60	plus

Contig Sequence (453 bp)

>U35_8067 453 Hv_44K_v2
ATCCCTCCAAACATATACCGCGAGATAGAAAAAAAAGAAAAACAACAGATCTGCCCATGA
GTGAGGAACTCAACCGGGACTACGAGATCGGGGAGGAGGTAGGGCGCGGCCGCTTCGGCG
TGGTCCGCCGCTGCGCGTCCCGCTCCACCGGCGACCTCTACGCCGTCAAGTCGGTCGACC
GCTCGCTCCTCGCCGACGACCTGGACCGCGGCCTGGCCGAGCTGGAGCCCAAGCTGGCGC
AGCTGGCCGCCGCGGGCAACCCCGGCGTCGTGCAGGTGCACGCGGTGTACGAGGACGAGG
CGTGGACGCACATGGTCATGGACCTGTGCGCCGGGCCCGACCTGCTCGACTGGGTCCGCC
TCCGCCAGGGCGCGCCCGTCCCGGAGCCCGAGGCCGCCGCCGTGGCCGCGCAGCTCGCCG
AGGCCCTCGCCGTCTGCCACCGCCGCGGCGTCG

Homology of Contig U35_8067 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi5g15790.1	291	1e-53
Arabidopsis v10	None