barSeed - Barley Seed Development Database

Probe CUST_8452_PI390587928

Source Contig U35_8068

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8452_PI390587928	Hv_44K_v2	CAAGGACCGGTACCTCTTCGGGCGGTTCGACCTCGACATCAGGCTCGTCGCCGGCGAGTC	288	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360254	2360	2e-24	266 - 325	100	60 / 60	plus	None
MLOC	AK358294	1199	2e-24	339 - 398	100	60 / 60	plus	ABC02669 ABC02670 ABC02672 ABC02673
MLOC	MLOC_21902.1	1165	2e-24	434 - 493	100	60 / 60	minus	ABC02669 ABC02670 ABC02672 ABC02673
JLOC1	JLOC1_15187.1	919	8e-25	413 - 472	100	60 / 60	plus
Harvest35	U35_8068	459	3e-25	289 - 348	100	60 / 60	plus

Contig Sequence (459 bp)

>U35_8068 459 Hv_44K_v2
AAAAAAAAAAAGAAAAAAAAAAAAACCTTCTCCCGACATCTCGCCGTCGACCGCCACCCC
CATTTCAAAAACCACGGGAGAAGGCACCGCGCACGCGGAGATGCTGCGCGGCTCCCTCCG
GTGGCTGCTGGTGCTGGCCGTGGTGGTGGCGGCGTCCGCCGGGAAGGCCGGCCGGGGCCT
GCACCGGGACTTCGACGCCGTGTGGGGGAAGCGCAATGCGCGCTTCTTCGACGAGGGCCG
GGTGGTGGAGCTGGCGCTGGACCGGGAGACGGGGTCCAGGCTGCAGTCCAAGGACCGGTA
CCTCTTCGGGCGGTTCGACCTCGACATCAGGCTCGTCGCCGGCGAGTCCGCCGGGACCAT
CACCTCCTTCTACATCTGCACGGGTGGCGCGCGGCACGACGAGGTGGACTTCGAGTTCCT
GGGCAACGTGAGCGGCGAGCCCTACATCCTGCACACCAA

Homology of Contig U35_8068 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g48170.1	300	2e-51	protein\|glycosyl hydrolases family 16, putative, expressed
Brachypodium v1_2	Bradi1g33817.1	301	1e-54
Arabidopsis v10	None