barSeed - Barley Seed Development Database

Probe CUST_8446_PI390587928

Source Contig U35_8074

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8446_PI390587928	Hv_44K_v2	AATAACTTCTCAGATTCTACAGGTGGAGAACATACAGGCTGAGCAGCTACCCACCGTTTT	871	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369012	1651	2e-24	1266 - 1325	100	60 / 60	plus	ABC09810 ABC24298
MLOC	MLOC_44404.1	2844	2e-24	1379 - 1438	100	60 / 60	plus	ABC07486 ABC24298
MLOC	MLOC_44404.5	3030	2e-24	1522 - 1581	100	60 / 60	plus	ABC07486 ABC24298
JLOC1	JLOC1_28782.1	2339	8e-25	760 - 819	100	60 / 60	plus
Harvest35	U35_8074	1265	3e-25	872 - 931	100	60 / 60	plus

Contig Sequence (1265 bp)

>U35_8074 1265 Hv_44K_v2
GCAGCAGCGAGCCCCGGCGGCCGGCGGCGGCGACATGTCGGGGGAGGACGTCCGCAAGGT
CCAGAATCTCATCGAGCGCTGTCTCCAGCTGTATATGAACCAGAAAGAGGTGATTGATAC
CCTCTCCCTTGAGGCCAAGATAGAACCCAGCTTTACTGAACTTGTTTGGCAAAAACTTGA
GGAAGAGAACCGTGAATTTTTTAAGGCATACTATGTGAGGCTGATGCTTAAGAATCAAAT
AACGGCCTTCAACAAGCTTCTTCAGGATCAGTTCCAGCTTATGAACAAAGACTATTCTTC
AGGGATCCCTTCTATGCCTCTTACTAATGGCTCCAACTCAACAACATTGAAGCAAAACTC
ATGCTTTTTACCAGAGTCCGGTCCCATGTCTGCAATGCCAAATGGTGCGATGCACAACGG
AAGTTCAGGTGGTTTAGTAAATGGTACATCATCTGGTGATCAGTCAATTTATGGTGGTAA
AGACATTCACGGTCCTCGTAGTGGTATGGATGCTTCAACCAGCGTGCTACCAGCCCAGAA
TGCATCTGCTCTGCTGTATGGTGCAGATAATAATGGTACAACAATAAAGACAGAGTCAAG
CTATTCGAGCAACGCTGATTTTGCTTTCTGTGGGAATGCTTTCCTTGAATCATGCCAATC
AATTGGTGATGCCTCGGGTGGTTCCTTTAGCAGCTCAGAGTTGAACGGACAACCACTGAA
TGATGCACTTTTGGATATGGAGTCATCGTCATTTGGCTTCTTGAGCCAGATTCCCCGGAA
TTTCAGTTTTTCAGACTTAACAGAGGGGTTCAACCAAAATACAGAAGTATTGGACAATTA
TAGCAGGTCACCATTTCTCTCATCTGAGCCAAATAACTTCTCAGATTCTACAGGTGGAGA
ACATACAGGCTGAGCAGCTACCCACCGTTTTGTACATATTCATGGAGAACTTGAGCAACT
TTCATGTTAGCATTTTCCCTTGTTAGTTCCAATGTCTTGTAATGTAACAGTATGGGATGA
GTTGTAACTTGATGGGAACATGCAGTAGTTCTGCCCCCCGGTTGCTTGCCGAAGGTATTG
TAGTTGTGCCTGCCTTGTACATTGATGTTGTGGCTGTAAGATCCGCCATTAGTCGCTGTG
ATGTTTAATTTGCCGAAGGTATTGTAGTTGTGCCTGCCTTGTACATTGATGTTGTGGCTG
TAAGATCCGCCATTAGTCGATGTGATGTTTAATTTGCGAGTCCGTCAAAAAAAAAATAAG
AAAAA

Homology of Contig U35_8074 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g49180.1	290	2e-146	protein\|plant-specific domain TIGR01589 family protein, putative, expressed
Brachypodium v1_2	Bradi1g34566.1	293	3e-179
Arabidopsis v10	AT3G10250.1	324	1e-77	Plant protein 1589 of unknown function \| chr3:3168371-3170418 REVERSE LENGTH=324